Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 0.0e+00 1310.8 687 100.0
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 0.0e+00 1310.8 687 100.0
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 0.0e+00 1310.8 687 100.0
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 0.0e+00 1112.1 702 86.8
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 0.0e+00 1109.4 702 86.6
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 0.0e+00 1099.3 694 86.6
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 5.7e-284 980.7 707 77.8
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 2.6e-244 849.0 697 67.7
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 5.1e-240 834.7 693 68.8
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 8.7e-232 807.4 671 68.1
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 3.3e-215 752.3 716 62.2
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 3.9e-208 728.8 703 60.5
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 1.9e-202 709.9 498 76.3
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 6.5e-195 684.9 697 60.3
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 1.9e-114 417.5 701 42.5
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 2.6e-111 407.1 650 44.0
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 4.6e-108 396.4 719 39.8
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 4.3e-106 389.8 639 43.0
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 4.3e-106 389.8 639 42.9
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 1.6e-105 387.9 797 35.4
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.1e-104 385.2 727 38.2
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 7.6e-103 379.0 736 37.8
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 1.1e-101 375.2 660 40.0
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.4e-101 374.8 736 39.5
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.2e-101 373.6 728 38.2
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 1.2e-100 371.7 725 39.0
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.3e-99 367.5 734 37.3
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 6.7e-99 365.9 719 37.8
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 4.3e-98 363.2 715 38.2
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 1.8e-96 357.8 714 37.8
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 2.9e-94 350.5 589 39.9
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 2.9e-94 350.5 719 33.8
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.9e-93 347.8 663 38.8
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.5e-93 347.4 645 39.4
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 3.2e-93 347.1 651 40.6
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 4.2e-93 346.7 732 35.8
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 1.2e-92 345.1 679 38.9
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 1.6e-92 344.7 669 39.2
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.9e-91 340.1 719 37.0
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 8.7e-91 339.0 733 37.7
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 8.7e-91 339.0 631 41.0
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 2.5e-90 337.4 716 37.8
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 2.8e-89 334.0 728 33.5
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 3.7e-89 333.6 728 35.7
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 3.7e-89 333.6 660 37.9
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 1.1e-88 332.0 680 37.9
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 1.1e-88 332.0 658 38.4
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 1.1e-88 332.0 620 40.2
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 1.4e-88 331.6 720 36.7
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 6.9e-88 329.3 726 34.4
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 6.9e-88 329.3 650 38.3
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 2.9e-86 323.9 651 37.9
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 6.5e-86 322.8 741 36.0
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 6.5e-86 322.8 741 36.0
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 6.5e-86 322.8 661 36.2
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.1e-85 322.0 671 37.1
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 3.2e-85 320.5 715 34.8
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 1.8e-83 314.7 751 35.0
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 7.4e-82 309.3 719 34.6
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 9.7e-82 308.9 657 35.0
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 2.8e-81 307.4 679 37.7
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 9.0e-80 302.4 726 34.4
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 9.0e-80 302.4 707 34.5
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.0e-78 298.9 714 34.2
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 1.3e-78 298.5 534 39.9
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 5.0e-78 296.6 725 34.8
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 3.2e-77 293.9 631 36.0
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 4.6e-76 290.0 723 33.9
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 1.4e-75 288.5 667 33.1
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 1.8e-75 288.1 647 34.9
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 3.0e-75 287.3 667 32.5
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 6.7e-75 286.2 673 34.9
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 3.3e-74 283.9 743 34.6
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 7.4e-74 282.7 918 30.7
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.7e-73 281.6 716 35.6
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 6.3e-73 279.6 679 33.3
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 4.1e-72 276.9 577 34.8
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 1.7e-70 271.6 706 33.1
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 1.1e-69 268.9 632 33.1
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 7.2e-69 266.2 351 49.9
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 5.7e-66 256.5 796 30.5
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 1.3e-65 255.4 309 51.8
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.4e-64 251.9 742 33.0
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 2.7e-60 237.7 495 34.3
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 1.1e-56 225.7 784 29.1
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.5e-53 214.5 278 44.2
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 9.4e-53 212.6 278 43.9
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 4.0e-51 207.2 672 29.8
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 1.5e-45 188.7 227 49.8
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 1.1e-40 172.6 598 29.6
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 1.2e-36 159.1 409 33.7
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 4.6e-31 140.6 151 53.6
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 3.1e-27 127.9 151 50.3
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 9.8e-26 122.9 423 27.9
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.0e-22 110.5 150 48.0
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 3.3e-21 107.8 165 44.2
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 5.6e-21 107.1 348 29.3
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 2.1e-20 105.1 331 32.0
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 2.3e-19 101.7 159 41.5
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.3e-19 101.7 133 45.9
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 1.2e-18 99.4 528 22.7
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 4.4e-18 97.4 312 31.4
BolC3t14428H Brassica oleracea HOM05D006140 ORTHO05D041528 5.8e-18 97.1 70 71.4
C03p20480 Brassica napus HOM05D006140 ORTHO05D041528 7.5e-18 96.7 70 71.4
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 9.8e-18 96.3 330 30.9
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 9.2e-16 89.7 236 32.2
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 3.0e-14 84.7 122 40.2
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 1.9e-13 82.0 423 22.5
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 4.7e-12 77.4 259 26.6
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 4.7e-12 77.4 248 31.9
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 6.2e-12 77.0 332 26.8
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 7.6e-10 70.1 609 22.8
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 1.6e-07 62.4 55 60.0
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.7e-06 58.9 169 36.7
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 2.3e-06 58.5 110 42.7
COL.COLO4_16906 Corchorus olitorius HOM05D006140 ORTHO05D007834 8.6e-06 56.6 93 43.0


User provided reference genes

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