Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.2e-42 175.3 90 100.0
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.4e-41 172.6 90 98.9
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 3.4e-35 151.4 90 91.1
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 5.8e-27 124.0 93 71.0
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 7.5e-27 123.6 93 71.0
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-26 122.9 93 69.9
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 1.3e-26 122.9 93 69.9
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.7e-26 122.5 93 71.0
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 2.9e-26 121.7 93 68.8
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 2.9e-26 121.7 93 68.8
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 2.9e-26 121.7 93 68.8
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 3.7e-26 121.3 93 69.9
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 3.7e-26 121.3 93 69.9
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 3.7e-26 121.3 93 71.0
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 4.9e-26 120.9 93 68.8
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 4.9e-26 120.9 93 68.8
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 4.9e-26 120.9 93 68.8
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-25 119.8 93 67.7
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.1e-25 119.8 93 67.7
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-25 119.8 93 67.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.4e-25 118.6 93 67.7
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 5.4e-25 117.5 93 67.7
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 5.4e-25 117.5 93 67.7
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 9.2e-25 116.7 93 66.7
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.1e-22 109.8 93 62.4
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.5e-22 108.6 93 61.3
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.3e-22 108.2 93 61.3
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-20 103.2 55 98.2
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.4e-20 102.1 93 55.9
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 4.0e-20 101.3 93 53.8
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-19 99.8 58 91.4
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 1.5e-19 99.4 92 55.4
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.5e-19 99.4 93 54.8
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.5e-19 99.4 94 54.3
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.6e-19 98.6 93 52.7
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.4e-19 98.2 93 55.9
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 4.4e-19 97.8 93 53.8
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 5.8e-19 97.4 93 55.9
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.6e-19 97.1 93 51.6
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 7.6e-19 97.1 93 54.8
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 9.9e-19 96.7 93 57.0
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.3e-18 96.3 93 52.7
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.3e-18 96.3 93 54.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.7e-18 95.9 93 53.8
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 1.7e-18 95.9 93 53.8
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.7e-18 95.9 93 53.8
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.7e-18 95.9 92 54.3
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 2.2e-18 95.5 93 53.8
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 2.2e-18 95.5 93 50.5
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.2e-18 95.5 93 50.5
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.2e-18 95.5 93 51.6
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.2e-18 95.5 93 51.6
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 2.2e-18 95.5 93 52.7
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 2.9e-18 95.1 93 53.8
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 2.9e-18 95.1 93 53.8
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.9e-18 95.1 95 52.6
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 3.8e-18 94.7 93 52.7
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 3.8e-18 94.7 93 52.7
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.8e-18 94.7 93 50.5
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.8e-18 94.7 93 49.5
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 3.8e-18 94.7 93 51.6
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 3.8e-18 94.7 93 52.7
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 4.9e-18 94.4 93 53.8
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 4.9e-18 94.4 92 53.3
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 4.9e-18 94.4 93 52.7
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 4.9e-18 94.4 93 52.7
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 6.4e-18 94.0 93 53.8
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 6.4e-18 94.0 93 52.7
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 8.4e-18 93.6 93 49.5
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 8.4e-18 93.6 93 51.6
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 8.4e-18 93.6 93 53.8
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 8.4e-18 93.6 93 51.6
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.1e-17 93.2 93 52.7
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.1e-17 93.2 93 52.7
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.1e-17 93.2 93 49.5
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.1e-17 93.2 93 53.8
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.4e-17 92.8 93 51.6
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 1.4e-17 92.8 93 51.6
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.9e-17 92.4 93 52.7
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.9e-17 92.4 93 49.5
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 1.9e-17 92.4 93 51.6
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 2.4e-17 92.0 93 51.6
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 2.4e-17 92.0 93 51.6
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 2.4e-17 92.0 93 52.7
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.2e-17 91.7 93 48.4
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 3.2e-17 91.7 95 51.6
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 3.2e-17 91.7 99 52.5
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 3.2e-17 91.7 99 52.5
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 4.2e-17 91.3 93 50.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 4.2e-17 91.3 93 50.5
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 4.2e-17 91.3 93 52.7
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 4.2e-17 91.3 93 50.5
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 4.2e-17 91.3 92 48.9
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 4.2e-17 91.3 93 50.5
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 4.2e-17 91.3 93 50.5
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 5.4e-17 90.9 93 52.7
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 5.4e-17 90.9 93 53.8
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 5.4e-17 90.9 93 53.8
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 7.1e-17 90.5 93 51.6
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 9.2e-17 90.1 93 51.6
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 9.2e-17 90.1 95 51.6
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 1.2e-16 89.7 93 49.5
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.2e-16 89.7 93 50.5
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.6e-16 89.4 93 50.5
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.6e-16 89.4 92 52.2
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.1e-16 89.0 93 50.5
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 3.5e-16 88.2 93 49.5
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.5e-16 88.2 92 47.8
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.6e-16 87.8 92 48.9
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.6e-16 87.8 93 49.5
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 4.6e-16 87.8 93 47.3
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 7.8e-16 87.0 93 52.7
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 1.0e-15 86.7 93 49.5
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.0e-15 86.7 92 47.8
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.3e-15 86.3 92 47.8
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.3e-15 85.5 93 48.4
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 2.3e-15 85.5 93 50.5
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 3.9e-15 84.7 93 45.2
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 3.9e-15 84.7 93 50.5
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 6.6e-15 84.0 93 48.4
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 6.6e-15 84.0 93 48.4
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 1.1e-14 83.2 94 44.7
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.5e-14 82.0 93 46.2
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.5e-14 82.0 93 46.2
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 2.5e-14 82.0 93 50.5
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 7.3e-14 80.5 122 41.0
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 7.3e-14 80.5 93 44.1
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.2e-13 79.7 56 64.3
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 3.6e-13 78.2 94 46.8
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.7e-13 77.8 92 43.5
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.4e-12 76.3 57 61.4
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 5.8e-11 70.9 119 40.3
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.3e-10 69.7 93 45.2
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 5.4e-09 64.3 98 41.8
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 4.6e-08 61.2 70 47.1
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 6.0e-08 60.8 57 49.1
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.1e-06 56.6 68 42.6


User provided reference genes

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