Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 3.5e-149 531.6 262 100.0
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-147 526.2 262 98.5
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 2.4e-142 508.8 260 95.4
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 3.9e-140 501.5 260 93.5
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 8.6e-140 500.4 260 93.1
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-138 495.4 242 99.6
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 3.6e-138 495.0 260 92.3
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 4.7e-138 494.6 261 92.3
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 4.7e-138 494.6 261 92.3
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 4.7e-138 494.6 261 92.3
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 6.2e-138 494.2 258 93.8
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.8e-137 492.7 260 91.2
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.4e-137 492.3 260 90.8
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 5.2e-137 491.1 260 91.2
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 5.2e-137 491.1 260 90.8
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 8.9e-137 490.3 260 91.5
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 8.9e-137 490.3 260 91.5
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.5e-136 489.6 260 90.4
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 3.4e-136 488.4 241 98.3
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 2.1e-130 469.2 240 93.3
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.4e-127 457.6 266 81.6
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.9e-126 456.1 266 81.2
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.1e-123 446.8 278 77.7
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-120 436.8 223 96.4
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 3.5e-109 398.7 265 70.2
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 4.6e-109 398.3 267 70.4
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 5.1e-108 394.8 266 69.5
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 2.5e-107 392.5 266 71.1
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.3e-107 392.1 266 69.5
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 4.8e-106 388.3 266 68.4
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 6.2e-106 387.9 266 67.7
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 3.1e-105 385.6 266 67.3
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 3.1e-105 385.6 268 67.2
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 4.0e-105 385.2 266 68.4
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.0e-105 384.0 271 67.5
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.0e-105 384.0 271 67.5
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.2e-104 383.6 266 68.8
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.5e-104 383.3 260 68.8
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.0e-104 382.9 266 67.3
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 2.6e-104 382.5 266 67.3
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 4.5e-104 381.7 267 66.7
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.8e-104 381.3 266 67.3
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 7.6e-104 380.9 269 66.2
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.0e-103 380.6 266 66.9
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.3e-103 380.2 266 64.7
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.2e-103 379.4 266 66.9
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 2.2e-103 379.4 265 66.4
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.9e-103 379.0 266 64.3
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.9e-103 379.0 265 67.9
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 2.9e-103 379.0 265 67.2
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 3.8e-103 378.6 265 66.8
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 4.9e-103 378.3 262 67.6
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.1e-102 377.1 266 64.3
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.1e-102 377.1 259 67.6
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.1e-102 377.1 267 65.9
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.1e-102 377.1 261 67.0
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.4e-102 376.7 266 64.7
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.5e-102 375.9 266 64.3
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.5e-102 375.9 267 65.5
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.2e-102 375.6 266 65.8
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 9.3e-102 374.0 261 65.5
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-101 373.6 261 67.0
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.2e-101 373.6 266 65.8
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 1.6e-101 373.2 264 65.2
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.6e-101 373.2 265 65.3
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.1e-101 372.9 266 63.9
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 2.1e-101 372.9 276 64.5
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 2.1e-101 372.9 265 66.0
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 2.7e-101 372.5 266 65.0
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.5e-101 372.1 267 67.0
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.6e-101 371.7 265 64.9
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 7.9e-101 370.9 264 65.9
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.3e-100 370.2 266 65.4
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.3e-100 369.4 266 65.0
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 3.0e-100 369.0 265 64.9
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.9e-100 368.6 269 64.3
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 3.9e-100 368.6 265 64.9
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 5.1e-100 368.2 266 65.0
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.1e-99 367.1 295 62.0
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.9e-99 366.3 264 65.2
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.3e-99 365.2 261 64.8
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.7e-99 364.8 268 64.9
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.7e-99 364.8 268 64.9
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 5.7e-99 364.8 265 64.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 9.7e-99 364.0 291 61.2
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 9.7e-99 364.0 270 62.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.3e-98 363.6 262 64.1
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 2.8e-98 362.5 269 62.5
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 2.8e-98 362.5 261 66.7
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 8.2e-98 360.9 265 62.6
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 8.2e-98 360.9 265 62.6
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.8e-97 359.8 265 64.5
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.8e-97 359.8 264 63.3
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.8e-97 359.8 265 62.6
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 1.5e-96 356.7 262 61.5
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 3.4e-96 355.5 265 62.6
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 4.5e-96 355.1 261 62.8
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.2e-95 352.8 265 60.4
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 2.9e-95 352.4 262 61.1
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.8e-95 352.1 265 62.6
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.2e-94 348.6 265 60.8
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 3.0e-92 342.4 252 63.1
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.8e-90 335.9 265 59.6
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 2.8e-90 335.9 256 60.9
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 4.8e-90 335.1 331 51.1
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 6.3e-90 334.7 261 60.2
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.4e-89 333.6 263 59.3
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.4e-89 333.6 263 59.3
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 2.4e-89 332.8 246 61.8
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 6.9e-89 331.3 244 63.9
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 9.1e-89 330.9 287 57.1
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.0e-88 329.7 264 59.5
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.8e-87 325.5 264 58.7
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.9e-86 323.2 234 63.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 4.2e-86 322.0 247 60.7
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.6e-85 320.1 242 62.4
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 9.1e-81 304.3 264 53.8
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.4e-76 290.4 259 53.7
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.0e-76 289.3 263 53.6
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 3.9e-76 288.9 259 50.2
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.5e-75 287.0 265 50.6
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.6e-75 286.2 259 52.5
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.1e-73 279.3 255 50.6
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.6e-72 276.2 191 63.9
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.2e-71 273.1 192 66.7
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 4.8e-66 255.4 248 54.0
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.1e-65 254.2 275 46.9
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 1.4e-65 253.8 173 69.9
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.8e-65 253.4 173 70.5
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 9.4e-62 241.1 257 50.2
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 8.0e-61 238.0 157 70.1
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.4e-60 237.3 254 48.4
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.8e-50 203.0 142 69.0
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 8.6e-47 191.4 140 64.3
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.9e-46 190.3 141 65.2
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.4e-43 179.1 127 61.4
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 9.2e-41 171.4 262 35.1
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.0e-39 167.9 114 66.7
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 2.3e-39 166.8 93 83.9
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.1e-36 156.4 107 69.2
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 9.2e-33 144.8 74 87.8
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.7e-29 132.5 106 57.5
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 5.2e-28 129.0 93 73.1
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 7.6e-27 125.2 304 33.2
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-26 124.4 93 69.9
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 1.4e-25 120.9 93 68.8
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.2e-24 117.9 174 40.2
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 2.1e-24 117.1 249 31.7
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 2.3e-23 113.6 96 59.4
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 9.6e-22 108.2 220 31.8
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 4.4e-19 99.4 51 88.2
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.1e-17 94.7 102 45.1
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 4.6e-16 89.4 52 84.6
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 5.1e-15 85.9 55 78.2
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 1.8e-12 77.4 171 32.2
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-11 74.7 66 56.1
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 4.2e-09 66.2 63 47.6
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 2.5e-06 57.0 44 61.4


User provided reference genes

Program Settings