Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 4.9e-166 587.8 315 100.0
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 4.9e-166 587.8 315 100.0
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 3.2e-165 585.1 315 99.7
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 3.0e-155 552.0 316 94.9
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 4.5e-151 538.1 315 93.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.7e-150 536.2 315 91.7
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 2.0e-146 522.7 315 83.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 3.2e-141 505.4 315 81.6
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 4.8e-137 491.5 315 79.7
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 7.5e-130 467.6 316 77.5
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.4e-128 463.4 316 77.5
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.7e-126 456.4 314 71.7
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.8e-126 455.3 319 73.0
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 3.8e-126 455.3 315 76.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.1e-124 449.5 318 71.1
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 4.4e-122 441.8 320 72.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.3e-107 392.9 337 60.5
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.0e-106 389.8 335 62.1
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 5.2e-91 338.6 324 55.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.2e-89 333.2 332 53.6
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 4.9e-89 332.0 326 52.1
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.1e-88 330.9 321 53.6
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.9e-88 330.1 323 52.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.4e-88 329.7 323 52.9
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-88 328.9 332 53.0
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-88 328.9 332 53.0
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 4.1e-88 328.9 328 52.7
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 7.1e-88 328.2 325 52.6
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 7.1e-88 328.2 322 52.5
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.5e-87 325.9 342 52.0
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 4.6e-87 325.5 321 53.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.6e-87 325.5 321 52.6
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.3e-86 323.9 325 52.9
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.7e-86 323.6 323 52.9
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 3.0e-86 322.8 318 53.1
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 5.1e-86 322.0 333 51.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 6.6e-86 321.6 331 52.6
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 8.6e-86 321.2 327 51.4
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.1e-85 320.9 328 53.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.5e-85 320.5 327 52.6
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.9e-85 320.1 331 52.3
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.9e-85 320.1 329 51.4
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.5e-85 319.7 321 51.4
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 9.5e-85 317.8 332 49.4
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.2e-84 317.4 320 51.6
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.6e-84 317.0 326 51.8
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.6e-84 315.8 327 51.1
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 8.1e-84 314.7 332 51.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.4e-83 313.9 326 51.5
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.1e-83 312.8 329 52.3
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 4.0e-83 312.4 321 51.1
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 3.4e-82 309.3 332 49.1
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.4e-82 308.9 331 49.2
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.4e-82 308.9 329 49.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 5.8e-82 308.5 324 49.7
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 7.6e-82 308.1 331 49.5
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 9.9e-82 307.8 388 44.1
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.3e-81 307.4 326 51.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.4e-81 305.1 319 50.5
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 8.4e-81 304.7 263 56.7
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.1e-80 304.3 349 47.6
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.1e-80 304.3 263 56.3
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.9e-80 303.5 337 49.6
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.9e-80 303.5 362 46.7
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 5.4e-80 302.0 269 59.1
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 5.4e-80 302.0 325 49.2
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 9.2e-80 301.2 330 48.5
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 9.2e-80 301.2 330 49.1
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.7e-79 299.7 344 47.7
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.5e-79 299.3 335 50.1
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 4.6e-79 298.9 339 48.4
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 6.0e-79 298.5 303 51.8
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.0e-78 297.7 385 43.9
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.7e-78 297.0 355 45.6
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 3.9e-78 295.8 348 48.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.9e-78 295.8 324 47.8
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 5.1e-78 295.4 261 55.9
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 6.6e-78 295.0 345 47.0
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 8.7e-78 294.7 277 53.1
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.9e-77 293.5 322 47.5
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.5e-77 293.1 269 57.2
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 9.6e-77 291.2 263 54.0
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.6e-76 289.3 320 48.1
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 4.7e-76 288.9 306 51.3
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 4.7e-76 288.9 333 45.3
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.7e-76 288.9 268 55.6
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.4e-75 286.6 305 49.8
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 4.0e-75 285.8 324 48.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 6.9e-75 285.0 321 48.3
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 9.0e-75 284.6 331 46.5
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.0e-74 283.5 335 47.5
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 5.8e-74 282.0 254 52.8
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 3.8e-73 279.3 335 46.6
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.8e-73 279.3 338 46.7
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.8e-73 279.3 353 44.8
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 8.4e-73 278.1 389 41.1
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.6e-71 273.9 382 43.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.1e-71 273.5 225 56.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.7e-71 273.1 324 47.2
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 6.0e-71 271.9 331 45.0
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.0e-70 271.2 291 50.5
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.5e-69 267.3 271 50.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.5e-69 267.3 291 49.5
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.9e-69 266.9 265 54.0
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 7.3e-69 265.0 241 57.7
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.1e-67 259.6 337 43.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 4.5e-66 255.8 316 43.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 3.8e-65 252.7 294 48.0
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 7.9e-63 245.0 207 55.6
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 3.9e-62 242.7 210 54.8
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.5e-61 240.0 310 42.6
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 9.6e-61 238.0 316 42.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.9e-57 226.5 178 59.6
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.9e-57 225.7 386 37.0
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.4e-56 224.2 327 40.7
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 5.6e-53 212.2 157 59.9
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 7.1e-48 195.3 262 39.3
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.0e-47 192.2 285 41.1
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.7e-46 188.3 287 38.7
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 6.3e-44 182.2 159 52.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.5e-42 177.6 180 56.1
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 5.9e-42 175.6 371 32.9
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.7e-41 174.1 174 48.3
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 4.7e-31 139.4 321 32.4
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 8.8e-30 135.2 151 46.4
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.5e-26 122.9 153 41.2
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.4e-22 111.3 120 59.2
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.3e-19 99.4 152 35.5
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.5e-18 96.3 80 52.5
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.1e-16 91.7 118 49.2
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 8.0e-15 85.5 94 53.2
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.0e-14 85.1 73 57.5
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 6.7e-14 82.4 57 57.9
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.8e-14 82.0 87 43.7
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 6.3e-12 75.9 94 40.4
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.7e-07 59.7 101 36.6


User provided reference genes

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