Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p28280 Brassica napus HOM05D002872 ORTHO05D003204 3.0e-51 204.9 106 100.0
BolC7t43369H Brassica oleracea HOM05D002872 ORTHO05D003204 6.3e-49 197.2 101 100.0
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 4.5e-39 164.5 96 88.5
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 4.5e-39 164.5 96 88.5
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 1.3e-38 162.9 96 85.4
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 7.3e-37 157.1 96 84.4
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 9.5e-37 156.8 96 84.4
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 3.6e-36 154.8 96 83.3
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 2.6e-34 148.7 96 80.2
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 1.3e-33 146.4 92 80.4
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 2.9e-33 145.2 96 78.1
BraA03t14737Z Brassica rapa HOM05D002872 ORTHO05D003204 2.4e-32 142.1 101 74.3
THA.LOC104811711 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 7.0e-32 140.6 97 74.2
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 1.2e-31 139.8 96 76.0
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 3.5e-31 138.3 96 75.0
BcaC06g32751 Brassica carinata HOM05D002872 ORTHO05D003204 5.9e-31 137.5 86 83.7
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 7.8e-31 137.1 96 72.9
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 5.2e-27 124.4 115 59.1
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 6.8e-27 124.0 96 68.8
CARHR233960 Cardamine hirsuta HOM05D002872 ORTHO05D003204 1.2e-26 123.2 96 67.7
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 1.5e-21 106.3 88 56.8
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 1.9e-21 105.9 87 59.8
BcaC08g44136 Brassica carinata HOM05D002872 ORTHO05D003204 5.6e-21 104.4 62 85.5
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 3.6e-20 101.7 87 55.2
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 1.8e-19 99.4 92 51.1
MELO3C015562.2 Cucumis melo HOM05D002872 ORTHO05D003204 4.0e-19 98.2 82 58.5
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 3.4e-18 95.1 105 49.5
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 4.4e-18 94.7 82 56.1
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 5.8e-18 94.4 100 48.0
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 5.8e-18 94.4 84 53.6
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 7.5e-18 94.0 83 56.6
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 9.8e-18 93.6 82 56.1
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 1.3e-17 93.2 110 47.3
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 1.7e-17 92.8 82 54.9
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 1.7e-17 92.8 101 47.5
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 4.9e-17 91.3 82 54.9
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 4.9e-17 91.3 82 53.7
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 1.1e-16 90.1 82 57.3
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 1.1e-16 90.1 82 56.1
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 1.4e-16 89.7 84 51.2
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 1.4e-16 89.7 84 51.2
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 1.4e-16 89.7 81 53.1
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 1.9e-16 89.4 82 53.7
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 3.2e-16 88.6 82 53.7
Duzib168G2058 Durio zibethinus HOM05D002872 ORTHO05D003204 7.1e-16 87.4 109 47.7
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 7.1e-16 87.4 108 44.4
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 6.0e-15 84.3 81 51.9
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 6.0e-15 84.3 84 50.0
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 2.3e-14 82.4 82 47.6
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 2.3e-14 82.4 82 50.0
HanXRQChr02g0057611 Helianthus annuus HOM05D002872 ORTHO05D003204 8.6e-14 80.5 82 46.3
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 8.6e-14 80.5 82 47.6
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 1.9e-13 79.3 82 47.6
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 4.3e-13 78.2 82 47.6
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 1.6e-12 76.3 82 47.6
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 1.6e-12 76.3 82 43.9
Prupe.6G001300 Prunus persica HOM05D002872 ORTHO05D003204 1.6e-12 76.3 91 45.1
DCAR_001960 Daucus carota HOM05D002872 ORTHO05D003204 3.6e-12 75.1 81 46.9
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 2.3e-11 72.4 99 36.4
Haze_22913 Corylus avellana HOM05D002872 ORTHO05D003204 2.3e-11 72.4 82 43.9
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 2.3e-11 72.4 81 46.9
CsaV3_1G041510 Cucumis sativus L. HOM05D002872 ORTHO05D003204 3.1e-11 72.0 82 46.3
Gohir.A13G211000 Gossypium hirsutum HOM05D002872 ORTHO05D003204 3.1e-11 72.0 93 45.2
Sc16g0012250 Simmondsia chinensis HOM05D002872 ORTHO05D003204 8.9e-11 70.5 82 46.3
MSTRG.12807 Avicennia marina HOM05D002872 ORTHO05D003204 2.0e-10 69.3 82 45.1
Ca_18794_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 2.0e-10 69.3 99 36.4
RcHm_v2.0_Chr5g0084061 Rosa chinensis HOM05D002872 ORTHO05D003204 2.0e-10 69.3 91 41.8
FvH4_3g45950 Fragaria vesca HOM05D002872 ORTHO05D003204 4.4e-10 68.2 82 45.1
Lj4g0027888 Lotus japonicus HOM05D002872 ORTHO05D003204 4.4e-10 68.2 94 39.4
SalBow3G2375 Salvia bowleyana HOM05D002872 ORTHO05D003204 4.4e-10 68.2 82 42.7
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 5.8e-10 67.8 99 34.3
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 7.6e-10 67.4 66 43.9
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea HOM05D002872 ORTHO05D003204 1.3e-09 66.6 66 45.5
CDE08G0031 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 1.3e-09 66.6 82 40.2
FAN16G3031 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.7e-09 66.2 82 43.9
FAN25G3552 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.7e-09 66.2 82 43.9
FAN11G0810 Fragaria x ananassa HOM05D002872 ORTHO05D003204 2.9e-09 65.5 82 43.9
AUR62040893 Chenopodium quinoa HOM05D002872 ORTHO05D003204 4.9e-09 64.7 82 41.5
FAN21G2326 Fragaria x ananassa HOM05D002872 ORTHO05D003204 4.9e-09 64.7 82 42.7
Lalb_Chr09g0328951 Lupinus albus HOM05D002872 ORTHO05D003204 8.4e-09 63.9 72 40.3
MD11G1001100 Malus domestica HOM05D002872 ORTHO05D003204 8.4e-09 63.9 87 42.5
Phvul.002G101500 Phaseolus vulgaris HOM05D002872 ORTHO05D003204 1.1e-08 63.5 66 42.4
Psat7g134440 Pisum sativum HOM05D002872 ORTHO05D003204 1.4e-08 63.2 65 41.5
VMungo0251G2931 Vigna mungo HOM05D002872 ORTHO05D003204 2.4e-08 62.4 66 42.4
TPR.G34033 Trifolium pratense HOM05D002872 ORTHO05D003204 4.1e-08 61.6 65 41.5
AUR62042622 Chenopodium quinoa HOM05D002872 ORTHO05D003204 9.2e-08 60.5 82 39.0
Rhsim13G0234800 Rhododendron simsii HOM05D002872 ORTHO05D003204 9.2e-08 60.5 56 46.4
Glyma.07G225100 Glycine max HOM05D002872 ORTHO05D003204 1.6e-07 59.7 96 34.4
Lsat_1_v5_gn_3_74580 Lactuca sativa HOM05D002872 ORTHO05D022846 1.6e-07 59.7 132 31.1
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 2.1e-07 59.3 50 54.0
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 3.0e-06 55.5 50 48.0
CANSAT11G1709 Cannabis sativa HOM05D002872 ORTHO05D003204 3.0e-06 55.5 70 37.1
CSS0018255 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 3.9e-06 55.1 49 49.0
CSS0025152 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 3.9e-06 55.1 49 49.0


User provided reference genes

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