Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p63010 Brassica napus HOM05D003513 ORTHO05D013524 7.1e-105 384.0 207 100.0
C07p28040 Brassica napus HOM05D003513 ORTHO05D013524 7.1e-105 384.0 207 100.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-95 353.6 204 95.1
BraA04t16944Z Brassica rapa HOM05D003513 ORTHO05D013524 1.4e-92 343.2 204 92.6
A06p18750 Brassica napus HOM05D003513 ORTHO05D013524 1.5e-91 339.7 204 92.2
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 2.1e-80 302.8 224 80.4
A07p17600 Brassica napus HOM05D003513 ORTHO05D013524 5.2e-71 271.6 200 75.5
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.0e-70 269.6 156 96.8
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 3.1e-68 262.3 172 82.0
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-66 257.3 156 92.9
A04p12810 Brassica napus HOM05D003513 ORTHO05D013524 3.8e-66 255.4 193 78.2
BraA09t39125Z Brassica rapa HOM05D003513 ORTHO05D013524 1.6e-64 250.0 146 87.0
A06p48950 Brassica napus HOM05D003513 ORTHO05D013524 1.4e-63 246.9 174 77.6
C06p18700 Brassica napus HOM05D003513 ORTHO05D013524 2.6e-62 242.7 151 84.1
A08p23090 Brassica napus HOM05D003513 ORTHO05D013524 6.5e-58 228.0 123 92.7
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-41 172.2 123 83.7
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 4.3e-41 172.2 123 83.7
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 5.4e-36 155.2 131 73.3
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 3.3e-33 146.0 119 70.6
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-32 144.1 119 73.1
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 6.2e-32 141.7 105 74.3
BraA07t29479Z Brassica rapa HOM05D003513 ORTHO05D013524 1.8e-31 140.2 96 75.0
A08p11950 Brassica napus HOM05D003513 ORTHO05D004660 5.8e-30 135.2 93 86.0
A07p18740 Brassica napus HOM05D003513 ORTHO05D012646 9.2e-28 127.9 113 63.7
A05p23290 Brassica napus HOM05D003513 ORTHO05D013524 3.3e-25 119.4 62 93.5
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 7.3e-25 118.2 144 51.4
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.4e-22 109.4 136 53.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.3e-21 107.5 170 45.9
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-21 107.1 117 61.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-20 104.4 87 65.5
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-20 103.2 115 60.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 5.4e-20 102.1 123 54.5
BraA05t21193Z Brassica rapa HOM05D003513 ORTHO05D004660 7.1e-20 101.7 68 79.4
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 2.7e-19 99.8 116 58.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.7e-18 97.1 80 65.0
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 3.9e-18 95.9 111 60.4
A06p28030 Brassica napus HOM05D000163 ORTHO05D000962 1.5e-17 94.0 56 82.1
BraA06t25744Z Brassica rapa HOM05D000163 ORTHO05D000962 1.5e-17 94.0 56 82.1
Thhalv10010130m.g Eutrema salsugineum HOM05D000163 ORTHO05D000962 1.9e-17 93.6 56 82.1
BcaB02g09575 Brassica carinata HOM05D000163 ORTHO05D000962 3.3e-17 92.8 56 78.6
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 3.3e-17 92.8 123 51.2
Sp5g13010 Schrenkiella parvula HOM05D000163 ORTHO05D000962 3.3e-17 92.8 56 80.4
A06p18690 Brassica napus HOM05D000163 ORTHO05D000962 4.3e-17 92.4 56 80.4
BcaB01g00754 Brassica carinata HOM05D000163 ORTHO05D000962 5.6e-17 92.0 63 73.0
BcaC01g02384 Brassica carinata HOM05D000163 ORTHO05D000962 7.3e-17 91.7 56 80.4
C03p65850 Brassica napus HOM05D000163 ORTHO05D000962 7.3e-17 91.7 56 80.4
BolC3t18843H Brassica oleracea HOM05D000163 ORTHO05D000962 7.3e-17 91.7 56 80.4
CARHR157900 Cardamine hirsuta HOM05D003513 ORTHO05D013524 9.5e-17 91.3 60 78.3
BraA06t24951Z Brassica rapa HOM05D000163 ORTHO05D000962 1.6e-16 90.5 56 78.6
BcaC07g39381 Brassica carinata HOM05D000163 ORTHO05D000962 2.8e-16 89.7 56 78.6
C08p24040 Brassica napus HOM05D000163 ORTHO05D000962 2.8e-16 89.7 56 78.6
BolC8t50026H Brassica oleracea HOM05D000163 ORTHO05D000962 2.8e-16 89.7 56 78.6
Aa31LG4G17540 Aethionema arabicum HOM05D000163 ORTHO05D000962 3.6e-16 89.4 64 65.6
AL5G28580 Arabidopsis lyrata HOM05D000163 ORTHO05D000962 1.4e-15 87.4 57 77.2
AT3G49060 Arabidopsis thaliana HOM05D000163 ORTHO05D000962 1.4e-15 87.4 57 77.2
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.8e-15 87.0 121 47.9
Carub.0005s1526 Capsella rubella HOM05D000163 ORTHO05D000962 3.1e-15 86.3 56 76.8
THA.LOC104798933 Tarenaya hassleriana HOM05D000163 ORTHO05D000962 6.8e-15 85.1 56 71.4
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 7.6e-14 81.6 122 48.4
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.2e-12 76.3 120 44.2
BcaB02g08136 Brassica carinata HOM05D003513 ORTHO05D004660 3.2e-12 76.3 52 75.0
Prupe.2G297400 Prunus persica HOM05D000163 ORTHO05D000962 2.3e-10 70.1 62 54.8
A05p38730 Brassica napus HOM05D000051 ORTHO05D033618 4.3e-09 65.9 67 59.7
Cpa.g.sc107.75 Carica papaya HOM05D000163 ORTHO05D000962 9.6e-09 64.7 62 48.4
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.2e-08 64.3 46 69.6
MD01G1205000 Malus domestica HOM05D000163 ORTHO05D000962 1.2e-08 64.3 51 52.9
RcHm_v2.0_Chr1g0377811 Rosa chinensis HOM05D000163 ORTHO05D000962 2.8e-08 63.2 54 51.9
Hma1.2p1_2503F.1_g323410 Hydrangea macrophylla HOM05D000163 ORTHO05D000962 4.7e-08 62.4 54 53.7
Cfa016261 Carpinus fangiana HOM05D000163 ORTHO05D000962 6.2e-08 62.0 51 54.9
COL.COLO4_28045 Corchorus olitorius HOM05D000163 ORTHO05D000962 8.1e-08 61.6 62 46.8
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.1e-07 61.2 121 42.1
Dinv28415 Davidia involucrata HOM05D000163 ORTHO05D000962 1.4e-07 60.8 53 52.8
Actinidia34132 Actinidia chinensis HOM05D000163 ORTHO05D000962 1.8e-07 60.5 50 54.0
CiPaw.06G002200 Carya illinoinensis HOM05D000163 ORTHO05D000962 1.8e-07 60.5 45 57.8
Thecc.03G179900 Theobroma cacao HOM05D000163 ORTHO05D000962 2.4e-07 60.1 62 45.2
Duzib084G0524 Durio zibethinus HOM05D000163 ORTHO05D000962 3.1e-07 59.7 62 45.2
MBI18_g29424_MAGBIO Magnolia biondii HOM05D000163 ORTHO05D000962 3.1e-07 59.7 101 37.6
Atru.chr1.422 Acer truncatum HOM05D000163 ORTHO05D000962 4.0e-07 59.3 51 47.1
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 5.3e-07 58.9 46 54.3
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 5.3e-07 58.9 107 42.1
Ciclev10006472m.g Citrus clementina HOM05D000163 ORTHO05D000962 6.9e-07 58.5 41 61.0
FAN06G1883 Fragaria x ananassa HOM05D000163 ORTHO05D000962 6.9e-07 58.5 56 50.0
vmacro06656 Vaccinium macrocarpon HOM05D000163 ORTHO05D000962 9.0e-07 58.2 45 55.6
A02p38950 Brassica napus HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
A05p28350 Brassica napus HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
A09p17340 Brassica napus HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
A09p66900 Brassica napus HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
A10p10220 Brassica napus HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
C06p23980 Brassica napus HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
BraA03t13865Z Brassica rapa HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
BraA06t25935Z Brassica rapa HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
BraA09t37362Z Brassica rapa HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
BraA10t43101Z Brassica rapa HOM05D010800 ORTHO05D012646 1.2e-06 57.8 28 96.4
Potri.012G143100 Populus trichocarpa HOM05D000163 ORTHO05D000962 1.2e-06 57.8 63 42.9
FvH4_7g29840 Fragaria vesca HOM05D000163 ORTHO05D000962 1.5e-06 57.4 46 54.3
FAN06G2730 Fragaria x ananassa HOM05D000163 ORTHO05D000962 1.5e-06 57.4 46 54.3
Potri.002G160300 Populus trichocarpa HOM05D000163 ORTHO05D000962 1.5e-06 57.4 45 51.1
GSVIVG01028909001 Vitis vinifera HOM05D000163 ORTHO05D000962 1.5e-06 57.4 41 56.1
Ca_07924_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000962 2.0e-06 57.0 53 47.2
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.6e-06 56.6 120 35.8
A09p31960 Brassica napus HOM05D010800 ORTHO05D012646 3.4e-06 56.2 28 92.9
Manes.05G033800 Manihot esculenta HOM05D000163 ORTHO05D000962 3.4e-06 56.2 45 46.7
TWI39G1281 Tripterygium wilfordii HOM05D000163 ORTHO05D000962 3.4e-06 56.2 48 50.0
BNapus_Darmor_BZH_scaffold_38p00380 Brassica napus HOM05D010800 ORTHO05D012646 4.4e-06 55.8 28 92.9
C04p08740 Brassica napus HOM05D010800 ORTHO05D012646 4.4e-06 55.8 28 92.9
FAN10G1827 Fragaria x ananassa HOM05D000163 ORTHO05D000962 4.4e-06 55.8 46 52.2
Gohir.D12G257500 Gossypium hirsutum HOM05D000163 ORTHO05D000962 4.4e-06 55.8 52 48.1
Psat3g108160 Pisum sativum HOM05D000163 ORTHO05D000962 4.4e-06 55.8 58 43.1
A03p47510 Brassica napus HOM05D010800 ORTHO05D012646 5.8e-06 55.5 28 92.9
CSS0047795 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000962 5.8e-06 55.5 46 52.2
CANSAT21G2607 Cannabis sativa HOM05D000163 ORTHO05D000962 5.8e-06 55.5 43 55.8
Cc02_g02710 Coffea canephora HOM05D000163 ORTHO05D000962 5.8e-06 55.5 56 44.6
FAN03G0855 Fragaria x ananassa HOM05D000163 ORTHO05D000962 5.8e-06 55.5 45 53.3
FAN03G3049 Fragaria x ananassa HOM05D000163 ORTHO05D000962 5.8e-06 55.5 45 53.3
Gohir.A12G256100 Gossypium hirsutum HOM05D000163 ORTHO05D000962 5.8e-06 55.5 52 48.1
Manes.14G024800 Manihot esculenta HOM05D000163 ORTHO05D000962 5.8e-06 55.5 51 47.1
Ah.05g180570 Amaranthus hybridus HOM05D000163 ORTHO05D000962 9.9e-06 54.7 42 54.8
A09p24880 Brassica napus HOM05D010800 ORTHO05D012646 9.9e-06 54.7 28 89.3
CiPaw.01G062000 Carya illinoinensis HOM05D000163 ORTHO05D000962 9.9e-06 54.7 42 47.6
FAN10G3792 Fragaria x ananassa HOM05D000163 ORTHO05D000962 9.9e-06 54.7 46 52.2
Gorai.008G275700 Gossypium raimondii HOM05D000163 ORTHO05D000962 9.9e-06 54.7 41 58.5
TPR.G37712 Trifolium pratense HOM05D000163 ORTHO05D000962 9.9e-06 54.7 58 43.1


User provided reference genes

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