Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 3.3e-300 1034.2 513 100.0
BolC1t03802H Brassica oleracea HOM05D003376 ORTHO05D001185 8.3e-163 577.8 307 92.8
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.3e-151 538.1 542 55.9
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 1.3e-142 510.8 435 61.8
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.0e-140 503.4 436 61.2
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.9e-136 489.2 582 49.5
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 8.7e-136 488.0 544 53.9
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 1.1e-135 487.6 544 53.7
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 7.6e-132 474.9 588 48.8
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.2e-129 467.6 626 46.6
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.3e-128 463.4 420 59.5
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 8.7e-128 461.5 625 46.9
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 8.1e-126 454.9 420 59.0
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 9.6e-119 431.4 336 66.4
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.6e-118 430.6 410 58.3
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 5.5e-106 389.0 250 74.4
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 9.4e-106 388.3 313 64.9
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.7e-96 355.5 344 59.0
BraA06t26272Z Brassica rapa HOM05D003376 ORTHO05D001185 7.2e-82 308.9 552 39.5
BolC7t43332H Brassica oleracea HOM05D003376 ORTHO05D001185 3.0e-80 303.5 234 73.9
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 8.8e-72 275.4 430 44.4
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 1.7e-59 234.6 235 63.4
BcaB05g22490 Brassica carinata HOM05D003376 ORTHO05D001185 5.6e-58 229.6 136 77.2
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.2e-47 195.3 212 53.8
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.6e-47 194.1 497 31.2
C07p11800 Brassica napus HOM05D003376 ORTHO05D001185 2.3e-43 181.0 91 94.5
C03p79090 Brassica napus HOM05D003376 ORTHO05D001185 4.3e-42 176.8 91 92.3
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 5.6e-42 176.4 423 31.9
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.1e-41 174.5 439 31.7
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.2e-39 168.7 375 33.6
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.9e-38 164.1 440 30.5
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 8.4e-38 162.5 291 41.6
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 2.1e-36 157.9 432 31.2
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-33 148.7 432 29.2
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 2.8e-33 147.5 330 32.1
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 1.4e-32 145.2 371 32.3
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 1.4e-32 145.2 176 40.9
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.0e-32 143.7 433 29.1
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.8e-31 139.8 387 30.7
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 2.9e-30 137.5 231 35.5
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.3e-29 132.5 548 26.5
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-28 132.1 292 31.2
A04p12690 Brassica napus HOM05D003376 ORTHO05D001185 7.8e-28 129.4 269 37.2
BraA04t16927Z Brassica rapa HOM05D003376 ORTHO05D001185 7.8e-28 129.4 269 37.2
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.8e-28 129.4 384 30.5
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 1.3e-27 128.6 358 30.7
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 1.7e-27 128.3 209 37.3
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 2.3e-27 127.9 303 31.0
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.3e-27 127.9 416 29.1
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 6.6e-27 126.3 426 28.6
BolC1t03801H Brassica oleracea HOM05D003376 ORTHO05D001185 8.7e-27 125.9 79 83.5
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 1.1e-26 125.6 435 28.7
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-26 125.2 426 27.9
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 5.6e-26 123.2 381 28.3
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-25 121.7 261 33.3
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 2.8e-25 120.9 158 39.2
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 1.1e-24 119.0 444 26.4
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 1.1e-24 119.0 345 28.1
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 1.8e-24 118.2 328 30.8
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-24 117.5 514 26.8
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-24 117.1 165 37.0
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.0e-24 117.1 278 28.4
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.9e-24 116.3 539 27.1
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.9e-24 116.3 539 27.1
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 6.9e-24 116.3 418 27.5
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 9.0e-24 115.9 183 35.5
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 2.6e-23 114.4 164 39.0
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.9e-23 112.5 454 26.2
C07p11790 Brassica napus HOM05D003376 ORTHO05D001185 1.7e-22 111.7 72 81.9
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.9e-22 110.9 392 28.6
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.2e-21 107.1 396 29.3
C03p85050 Brassica napus HOM05D003376 ORTHO05D001185 5.4e-21 106.7 72 80.6
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 7.1e-21 106.3 159 36.5
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.1e-21 106.3 197 34.0
Thecc.07G158200 Theobroma cacao HOM05D005324 ORTHO05D001185 2.7e-20 104.4 187 30.5
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 6.0e-20 103.2 273 32.6
C04p31550 Brassica napus HOM05D003376 ORTHO05D001185 7.9e-20 102.8 72 76.4
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.9e-20 102.8 211 32.2
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-19 101.7 262 29.8
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 8.7e-19 99.4 218 30.3
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 8.7e-19 99.4 72 72.2
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-18 98.2 202 33.7
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 5.6e-18 96.7 72 63.9
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.4e-18 96.3 295 29.8
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.4e-18 96.3 164 35.4
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-17 95.1 193 32.6
A09p25430 Brassica napus HOM05D003376 ORTHO05D001185 4.8e-17 93.6 72 69.4
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 4.8e-17 93.6 177 33.9
Lj2g0023412 Lotus japonicus HOM05D005324 ORTHO05D018017 6.2e-17 93.2 132 37.1
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 2.4e-16 91.3 261 30.3
AL8G17350 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 3.1e-16 90.9 55 74.5
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-16 90.5 395 24.6
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.9e-16 89.7 195 32.8
AL3G45070 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 2.6e-15 87.8 55 72.7
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 2.6e-15 87.8 538 23.8
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.8e-15 86.7 250 32.8
A05p12400 Brassica napus HOM05D003376 ORTHO05D001185 9.9e-15 85.9 72 63.9
Atru.chr3.2328 Acer truncatum HOM05D005324 ORTHO05D001185 4.9e-14 83.6 104 41.3
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 1.9e-13 81.6 418 24.9
COL.COLO4_27206 Corchorus olitorius HOM05D003326 ORTHO05D001185 3.2e-13 80.9 217 30.4
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 1.6e-12 78.6 198 28.3
MBI14_g23481_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 2.7e-12 77.8 139 37.4
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 7.9e-12 76.3 369 26.8
BolC1t03800H Brassica oleracea HOM05D003376 ORTHO05D001185 5.1e-11 73.6 54 75.9
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.7e-11 72.8 421 24.0
QL07p038177 Quercus lobata HOM05D003376 ORTHO05D000002 1.1e-10 72.4 55 54.5
BcaC02g10207 Brassica carinata HOM05D003376 ORTHO05D001185 1.5e-10 72.0 44 81.8
Gorai.007G230600 Gossypium raimondii HOM05D013520 ORTHO05D011089 1.5e-10 72.0 54 59.3
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.5e-10 71.2 276 28.6
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 5.6e-10 70.1 113 33.6
Gorai.002G111800 Gossypium raimondii HOM05D003376 ORTHO05D011089 7.4e-10 69.7 54 59.3
Cc00_g07770 Coffea canephora HOM05D005324 ORTHO05D011089 9.6e-10 69.3 53 58.5
Cc00_g07190 Coffea canephora HOM05D003376 ORTHO05D000002 1.3e-09 68.9 57 54.4
COL.COLO4_29281 Corchorus olitorius HOM05D005324 ORTHO05D002858 1.3e-09 68.9 97 39.2
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 1.6e-09 68.6 57 56.1
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 2.1e-09 68.2 53 58.5
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.1e-09 68.2 57 54.4
Cc00_g33410 Coffea canephora HOM05D003376 ORTHO05D011089 2.1e-09 68.2 70 50.0
Lj2g0012661 Lotus japonicus HOM05D005324 ORTHO05D011089 2.1e-09 68.2 57 54.4
COL.COLO4_29705 Corchorus olitorius HOM05D029132 ORTHO05D011089 3.7e-09 67.4 63 47.6
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 4.8e-09 67.0 410 26.3
BraA05t20179Z Brassica rapa HOM05D003376 ORTHO05D001185 2.4e-08 64.7 146 34.2
Ca_04091_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-08 64.3 57 50.9
Ca_30525_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-08 64.3 57 50.9
Ca_14696_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.0e-08 63.9 57 49.1
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.0e-08 62.8 77 41.6
Carub.0008s0701 Capsella rubella HOM05D005324 ORTHO05D000800 1.2e-07 62.4 51 56.9
ECA248G2939 Erigeron canadensis HOM05D003376 ORTHO05D011089 1.2e-07 62.4 108 36.1
Atru.chr1.3843 Acer truncatum HOM05D005324 ORTHO05D000002 1.5e-07 62.0 51 56.9
ECA246G4097 Erigeron canadensis HOM05D003376 ORTHO05D000002 1.5e-07 62.0 55 50.9
Lj3g0012797 Lotus japonicus HOM05D003326 ORTHO05D001185 1.5e-07 62.0 57 50.9
Atru.chr8.643 Acer truncatum HOM05D005324 ORTHO05D001185 2.6e-07 61.2 52 55.8
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 5.8e-07 60.1 228 28.9
BolC4t23955H Brassica oleracea HOM05D003376 ORTHO05D001185 7.6e-07 59.7 46 65.2
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-06 59.3 235 27.2
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 2.2e-06 58.2 239 27.2
Ca_15185_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-06 58.2 51 51.0
MBI03_g38333_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 2.9e-06 57.8 209 26.3
Duzib093G1751 Durio zibethinus HOM05D005324 ORTHO05D001185 3.8e-06 57.4 49 51.0
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 4.9e-06 57.0 51 47.1
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.5e-06 56.6 185 28.6
PGSC0003DMG400046969 Solanum tuberosum HOM05D016590 ORTHO05D018017 6.5e-06 56.6 69 36.2
BraA01t01266Z Brassica rapa HOM05D003376 ORTHO05D001185 8.4e-06 56.2 31 77.4


User provided reference genes

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