Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 9.8e-110 400.6 251 100.0
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 4.9e-109 398.3 251 99.6
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 7.0e-108 394.4 251 98.8
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 3.9e-98 362.1 251 90.0
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 3.9e-98 362.1 251 90.0
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 1.9e-76 290.0 274 73.4
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 9.9e-70 267.7 261 69.7
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 9.9e-70 267.7 261 69.7
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 9.9e-70 267.7 261 69.7
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-67 260.0 198 76.8
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 3.3e-65 252.7 195 75.9
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 8.1e-64 248.1 250 70.8
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 2.9e-61 239.6 259 66.8
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-59 234.2 153 80.4
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 1.2e-59 234.2 153 80.4
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.2e-45 186.8 184 62.0
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 7.2e-44 181.8 181 61.9
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 3.0e-42 176.4 207 58.0
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 3.0e-42 176.4 207 58.0
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 3.0e-42 176.4 207 58.0
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 3.9e-42 176.0 171 64.3
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-41 174.5 179 61.5
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 1.5e-41 174.1 219 54.8
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.0e-41 173.7 191 56.0
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 5.7e-41 172.2 186 58.1
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 1.7e-40 170.6 189 57.1
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 2.2e-40 170.2 204 55.4
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 3.7e-40 169.5 209 55.0
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.1e-39 167.9 231 51.1
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.1e-39 167.9 152 63.2
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.8e-39 167.2 203 56.2
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 1.8e-39 167.2 195 54.9
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 5.3e-39 165.6 195 54.4
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 6.9e-39 165.2 176 60.2
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.5e-38 164.1 197 52.3
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.9e-37 159.8 175 58.3
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.4e-36 157.5 225 47.6
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 3.2e-36 156.4 166 58.4
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 4.2e-36 156.0 176 54.5
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 1.6e-35 154.1 132 63.6
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 3.9e-34 149.4 132 61.4
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 5.1e-34 149.1 132 61.4
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 6.7e-34 148.7 197 54.3
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 6.7e-34 148.7 132 62.9
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 6.7e-34 148.7 132 62.9
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 8.8e-34 148.3 132 61.4
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 1.1e-33 147.9 132 63.6
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 1.1e-33 147.9 141 58.9
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 2.0e-33 147.1 170 54.1
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 4.4e-33 146.0 132 59.1
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 7.4e-33 145.2 139 56.1
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 7.4e-33 145.2 199 50.3
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 7.4e-33 145.2 194 50.5
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 9.7e-33 144.8 139 57.6
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 9.7e-33 144.8 139 57.6
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 9.7e-33 144.8 168 52.4
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 9.7e-33 144.8 132 60.6
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.3e-32 144.4 165 53.9
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.7e-32 144.1 186 51.1
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 4.8e-32 142.5 197 47.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 4.8e-32 142.5 161 54.0
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 4.8e-32 142.5 168 52.4
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 4.8e-32 142.5 151 54.3
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 6.3e-32 142.1 151 54.3
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 8.2e-32 141.7 140 57.1
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.1e-31 141.4 218 47.7
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 2.4e-31 140.2 171 49.1
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 3.1e-31 139.8 214 47.2
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 3.1e-31 139.8 199 45.2
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 5.3e-31 139.0 142 54.2
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.3e-31 139.0 132 56.8
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 7.0e-31 138.7 170 70.6
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 7.0e-31 138.7 173 54.9
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 9.1e-31 138.3 171 70.2
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 9.1e-31 138.3 164 53.0
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.2e-30 137.9 139 55.4
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.2e-30 137.9 133 59.4
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.5e-30 137.5 132 57.6
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 2.6e-30 136.7 150 52.0
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 2.6e-30 136.7 161 51.6
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 3.5e-30 136.3 195 48.7
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 5.9e-30 135.6 144 53.5
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 7.7e-30 135.2 186 48.9
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.0e-29 134.8 189 48.1
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.3e-29 134.4 138 55.8
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 1.7e-29 134.0 167 49.1
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.7e-29 134.0 214 45.3
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 2.2e-29 133.7 172 47.1
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 2.9e-29 133.3 128 59.4
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 2.9e-29 133.3 179 46.9
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 5.0e-29 132.5 201 47.8
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 5.0e-29 132.5 162 53.1
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 6.5e-29 132.1 128 57.8
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.4e-28 131.0 144 51.4
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.2e-28 129.8 156 49.4
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 5.5e-28 129.0 133 57.1
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 5.5e-28 129.0 217 45.2
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 9.4e-28 128.3 133 55.6
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 1.2e-27 127.9 186 46.2
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.6e-27 127.5 190 44.2
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.6e-27 127.5 197 46.7
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.1e-27 127.1 161 49.1
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 2.7e-27 126.7 158 49.4
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.7e-27 125.9 158 48.7
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 4.7e-27 125.9 158 51.3
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 8.0e-27 125.2 139 50.4
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.4e-26 124.4 174 45.4
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.4e-26 124.4 196 43.9
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 2.3e-26 123.6 132 51.5
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.9e-26 122.9 158 48.1
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.9e-26 122.9 206 42.7
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.7e-26 122.1 157 47.8
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 6.7e-26 122.1 155 51.0
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 8.8e-26 121.7 132 53.8
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.1e-25 121.3 132 55.3
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 2.6e-25 120.2 169 46.7
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.4e-25 119.4 174 43.7
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 5.7e-25 119.0 179 42.5
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 1.3e-24 117.9 132 53.0
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 2.2e-24 117.1 181 45.3
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.2e-24 117.1 132 53.0
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.7e-24 116.3 155 47.1
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.4e-23 114.4 164 45.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 1.2e-22 111.3 139 47.5
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.5e-22 109.8 199 42.2
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.2e-21 107.1 194 40.2
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.8e-21 106.3 102 56.9
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 3.2e-20 103.2 132 49.2
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 5.5e-20 102.4 138 47.8
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 6.1e-19 99.0 110 52.7
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.3e-17 93.2 127 47.2
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 5.7e-17 92.4 137 43.8
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 4.8e-16 89.4 155 40.0
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 4.1e-15 86.3 117 44.4
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 9.1e-15 85.1 190 37.9
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.6e-14 84.3 156 38.5
CARHR178330 Cardamine hirsuta HOM05D027155 ORTHO05D023626 1.2e-11 74.7 126 65.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 8.0e-11 72.0 69 56.5
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.0e-10 70.1 135 37.0
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 4.0e-10 69.7 133 43.6
AL8G15030 Arabidopsis lyrata HOM05D027155 ORTHO05D023626 2.2e-08 63.9 127 63.0
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 5.4e-07 59.3 61 57.4


User provided reference genes

Program Settings