Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 1.5e-112 409.5 202 100.0
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 1.5e-112 409.5 202 100.0
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 8.0e-93 344.0 239 75.7
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 8.0e-93 344.0 239 75.7
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 8.0e-93 344.0 239 75.7
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 9.8e-83 310.5 240 70.8
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.8e-82 308.9 240 70.4
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.5e-78 296.6 221 72.9
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.4e-73 279.3 237 63.7
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 3.7e-66 255.4 221 65.2
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.6e-64 250.0 239 60.3
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 2.7e-64 249.2 245 59.6
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.3e-63 246.1 236 58.9
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.3e-63 246.1 234 61.1
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.9e-63 245.4 243 59.7
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.9e-62 243.0 238 59.7
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 8.9e-60 234.2 253 54.9
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 5.1e-55 218.4 187 62.0
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 5.1e-55 218.4 143 79.0
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.7e-50 202.2 221 57.9
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 9.2e-49 197.6 216 53.7
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.0e-47 194.1 210 53.3
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 3.0e-47 192.6 247 47.0
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 3.9e-47 192.2 233 49.4
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 6.6e-47 191.4 263 45.6
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 6.6e-47 191.4 225 48.0
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 4.3e-46 188.7 225 47.6
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 4.3e-46 188.7 225 47.6
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.2e-45 187.2 237 48.9
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 3.6e-45 185.7 247 48.2
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.1e-44 184.1 232 48.3
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-44 183.7 232 48.3
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.4e-44 183.0 225 48.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.0e-44 182.2 232 48.3
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 5.2e-44 181.8 243 47.3
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 5.2e-44 181.8 256 44.5
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 8.9e-44 181.0 247 46.2
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.4e-43 179.1 226 48.2
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 3.4e-43 179.1 192 55.7
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.4e-43 178.7 226 48.2
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 4.4e-43 178.7 210 51.0
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.8e-43 178.3 226 49.6
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 7.6e-43 177.9 264 42.8
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.6e-43 177.9 226 49.1
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 9.9e-43 177.6 252 44.4
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 2.9e-42 176.0 227 49.8
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 6.4e-42 174.9 235 48.9
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 8.4e-42 174.5 236 49.6
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 8.4e-42 174.5 236 49.6
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.1e-41 174.1 251 43.8
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 3.2e-41 172.6 218 49.1
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 9.3e-41 171.0 249 44.2
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.5e-40 169.1 260 41.2
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 4.6e-40 168.7 260 40.8
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.0e-39 167.5 251 45.0
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.3e-39 167.2 251 43.0
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.3e-39 166.4 243 46.9
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 3.9e-39 165.6 240 44.2
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 3.9e-39 165.6 240 44.2
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 3.9e-39 165.6 246 42.7
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.6e-37 160.2 233 45.1
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 2.8e-37 159.5 233 45.1
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 3.6e-37 159.1 226 43.4
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 8.1e-37 157.9 256 41.8
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 1.1e-36 157.5 150 56.7
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 1.4e-36 157.1 244 42.2
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.8e-36 156.8 257 40.1
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 3.1e-36 156.0 218 47.7
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 5.3e-36 155.2 214 45.3
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 2.0e-35 153.3 229 45.4
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.6e-35 152.9 245 42.4
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 2.6e-35 152.9 241 42.3
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 4.4e-35 152.1 261 38.7
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 9.9e-35 151.0 211 44.5
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 9.9e-35 151.0 120 65.0
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 4.9e-34 148.7 251 42.6
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 6.4e-34 148.3 232 43.1
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 3.2e-33 146.0 169 50.3
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 3.2e-33 146.0 231 40.7
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 3.2e-33 146.0 240 42.5
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 7.1e-33 144.8 240 42.1
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 1.6e-32 143.7 224 41.5
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 2.7e-32 142.9 95 78.9
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 3.5e-32 142.5 257 39.3
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 3.5e-32 142.5 189 47.1
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 6.0e-32 141.7 245 40.8
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 6.0e-32 141.7 258 39.1
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 6.0e-32 141.7 240 39.6
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 1.7e-31 140.2 240 40.8
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 1.7e-31 140.2 216 41.2
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 2.3e-31 139.8 124 61.3
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.3e-31 139.8 231 42.4
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 1.1e-30 137.5 218 43.1
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.9e-30 136.7 245 39.6
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.9e-30 136.7 91 79.1
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.9e-30 136.7 246 40.2
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 7.3e-30 134.8 251 37.8
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 7.3e-30 134.8 240 37.9
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.4e-28 130.6 230 39.1
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.8e-28 130.2 251 39.0
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 2.4e-28 129.8 247 38.1
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 3.1e-28 129.4 198 43.9
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 4.0e-28 129.0 155 45.8
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 4.0e-28 129.0 125 51.2
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 5.3e-28 128.6 240 37.1
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 5.3e-28 128.6 224 37.9
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 3.4e-27 125.9 150 52.0
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 8.4e-26 121.3 253 36.4
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.4e-25 120.6 254 36.6
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.4e-25 119.8 249 35.3
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.2e-25 119.4 133 45.1
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 4.2e-25 119.0 229 35.8
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 5.4e-25 118.6 70 82.9
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.6e-24 117.1 125 52.0
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 3.5e-24 115.9 210 40.5
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 6.0e-24 115.2 160 39.4
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 8.7e-23 111.3 133 44.4
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 7.4e-22 108.2 289 33.9
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.1e-20 104.4 151 42.4
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 7.6e-19 98.2 169 34.9
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 1.3e-18 97.4 99 54.5
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.7e-18 97.1 57 75.4
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.4e-17 94.0 251 30.7
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 5.5e-17 92.0 120 42.5
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 2.5e-14 83.2 102 50.0
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 4.3e-14 82.4 187 35.3
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 7.4e-14 81.6 223 29.6
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 4.8e-13 79.0 159 39.0
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 8.2e-13 78.2 75 57.3
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 2.4e-12 76.6 90 42.2
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 1.2e-11 74.3 146 38.4
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 7.1e-09 65.1 68 51.5
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 1.2e-08 64.3 69 53.6
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 3.0e-07 59.7 76 47.4
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 8.7e-07 58.2 120 37.5


User provided reference genes

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