Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-164 582.4 312 100.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-164 580.9 312 99.7
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 2.4e-157 558.9 312 97.1
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.1e-141 506.9 313 88.8
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 4.3e-122 441.8 312 80.4
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 3.4e-119 432.2 328 77.4
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.2e-98 364.0 361 63.2
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-90 337.4 343 61.8
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.8e-89 332.0 341 61.3
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.8e-89 332.0 341 61.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 8.3e-89 331.3 339 61.1
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.1e-88 330.9 341 61.0
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 9.1e-88 327.8 333 61.0
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 4.5e-87 325.5 344 61.3
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 6.8e-83 311.6 349 56.4
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 3.4e-82 309.3 347 57.1
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 8.3e-81 304.7 346 56.6
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 4.1e-72 275.8 354 52.5
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 7.8e-71 271.6 347 53.0
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.0e-67 261.2 340 54.7
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 4.3e-61 239.2 335 51.6
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-58 229.9 278 52.9
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 5.8e-58 228.8 346 50.0
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 6.8e-51 205.3 262 51.5
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 4.3e-37 159.5 380 40.5
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-36 157.9 374 40.6
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-35 154.1 386 38.6
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-35 154.1 375 40.0
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 9.0e-35 151.8 398 37.9
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-34 150.2 419 36.8
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 9.9e-34 148.3 435 35.9
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.3e-33 147.9 362 40.1
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-33 147.5 381 38.1
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 2.2e-33 147.1 418 37.1
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 3.8e-33 146.4 399 38.6
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 4.9e-33 146.0 356 40.7
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 4.9e-33 146.0 356 40.7
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.1e-32 144.8 398 38.4
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.4e-32 143.7 413 36.1
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 3.2e-32 143.3 413 36.6
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.6e-31 141.0 380 37.4
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.1e-31 140.6 359 38.2
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-31 140.6 419 37.2
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-31 140.6 359 38.2
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 2.1e-31 140.6 419 37.2
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-31 139.0 401 35.2
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 6.7e-30 135.6 435 34.0
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.3e-28 131.3 411 35.0
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-27 127.1 406 35.2
BolC7t43237H Brassica oleracea HOM05D004305 ORTHO05D005159 2.9e-25 120.2 70 92.9
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 9.3e-24 115.2 400 32.8
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 4.3e-21 106.3 432 31.0
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.8e-20 103.6 186 37.6
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 9.0e-19 98.6 177 41.2
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.4e-18 96.7 336 30.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 3.4e-18 96.7 336 31.0
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 2.2e-17 94.0 162 37.7
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.8e-17 93.2 200 36.0
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 4.9e-17 92.8 225 36.0
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 8.4e-17 92.0 158 41.1
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.1e-16 91.7 324 29.9
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.9e-16 90.9 162 38.3
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 2.5e-16 90.5 183 38.8
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 7.1e-16 89.0 192 34.9
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.2e-15 88.2 209 35.9
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.6e-15 87.8 165 37.0
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.1e-15 87.4 189 37.0
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 2.7e-15 87.0 211 33.6
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.7e-15 87.0 193 37.3
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 3.5e-15 86.7 216 33.8
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 4.6e-15 86.3 384 28.6
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 6.0e-15 85.9 191 34.6
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 7.9e-15 85.5 418 26.8
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.0e-14 85.1 187 38.5
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.0e-14 85.1 193 34.7
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 1.8e-14 84.3 200 34.5
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.0e-14 83.6 183 36.1
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 3.9e-14 83.2 187 34.8
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 6.7e-14 82.4 297 31.0
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 8.7e-14 82.0 188 37.8
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 2.5e-13 80.5 179 36.9
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.5e-13 80.5 198 33.3
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 2.5e-13 80.5 187 35.8
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.3e-13 80.1 187 36.9
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 5.7e-13 79.3 94 47.9
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 7.4e-13 79.0 190 36.8
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 9.7e-13 78.6 170 36.5
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.3e-12 78.2 298 29.2
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.6e-12 77.8 362 27.9
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.2e-12 77.4 181 37.0
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.2e-12 77.4 264 33.7
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.7e-12 76.6 199 33.2
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.8e-12 76.3 181 36.5
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 6.3e-12 75.9 117 41.9
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 6.3e-12 75.9 181 34.3
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 8.2e-12 75.5 57 61.4
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.1e-11 75.1 181 33.1
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.4e-11 74.7 181 33.7
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 1.4e-11 74.7 290 30.3
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.8e-11 74.3 182 31.9
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.8e-11 74.3 201 31.3
C07p27070 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-11 73.9 53 69.8
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.4e-11 73.9 167 40.1
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 3.1e-11 73.6 194 33.0
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 3.1e-11 73.6 260 30.4
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 4.1e-11 73.2 191 33.0
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 5.3e-11 72.8 57 64.9
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 6.9e-11 72.4 420 26.0
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 6.9e-11 72.4 203 32.0
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 6.9e-11 72.4 275 27.6
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 9.0e-11 72.0 233 30.5
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 1.2e-10 71.6 189 33.3
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.5e-10 71.2 193 35.2
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 1.5e-10 71.2 316 27.5
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.5e-10 71.2 193 29.0
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.0e-10 70.9 377 29.7
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 2.6e-10 70.5 380 27.1
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 2.6e-10 70.5 366 27.6
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 5.9e-10 69.3 332 28.3
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 1.3e-09 68.2 121 38.0
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.3e-09 68.2 361 26.9
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 1.7e-09 67.8 389 25.7
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 1.7e-09 67.8 249 31.3
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.7e-09 67.8 177 33.3
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.2e-09 67.4 69 53.6
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 2.9e-09 67.0 63 50.8
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 3.8e-09 66.6 159 35.2
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 5.0e-09 66.2 274 28.8
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 5.0e-09 66.2 57 50.9
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.1e-08 65.1 294 28.9
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 2.5e-08 63.9 370 26.8
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 3.2e-08 63.5 154 36.4
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 3.2e-08 63.5 358 27.1
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 4.2e-08 63.2 69 49.3
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 4.2e-08 63.2 307 28.0
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 9.3e-08 62.0 79 45.6
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.2e-07 61.6 354 27.4
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.1e-07 60.8 313 25.6
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.1e-07 60.8 170 30.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.6e-07 60.1 367 23.7
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 3.6e-07 60.1 307 27.7
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 3.6e-07 60.1 187 28.9
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.6e-07 59.7 269 27.9
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 4.6e-07 59.7 143 35.0
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 6.1e-07 59.3 181 31.5
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 6.1e-07 59.3 83 47.0
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.9e-07 58.9 314 28.0
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.8e-06 57.8 330 26.1
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.0e-06 57.0 316 28.8


User provided reference genes

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