Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 2.0e-52 208.8 99 100.0
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 2.0e-52 208.8 99 100.0
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 2.0e-52 208.8 99 100.0
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 2.0e-52 208.8 99 100.0
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 6.3e-51 203.8 99 96.0
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 2.7e-49 198.4 99 92.9
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 2.7e-49 198.4 99 92.9
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 2.7e-49 198.4 99 92.9
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 3.5e-49 198.0 99 92.9
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 5.9e-49 197.2 99 92.9
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 2.9e-48 194.9 99 90.9
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 1.0e-45 186.4 99 86.9
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 8.8e-45 183.3 99 87.9
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 1.3e-43 179.5 99 85.9
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 5.9e-41 170.6 96 82.3
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 7.7e-41 170.2 97 82.5
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 2.3e-40 168.7 99 82.8
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 5.0e-40 167.5 99 81.8
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 7.2e-39 163.7 97 81.4
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 2.1e-38 162.2 96 78.1
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 2.8e-38 161.8 97 78.4
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 2.8e-38 161.8 97 77.3
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 3.6e-38 161.4 97 77.3
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 6.1e-38 160.6 94 77.7
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 8.0e-38 160.2 102 75.5
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 8.0e-38 160.2 96 79.2
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 1.0e-37 159.8 97 77.3
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 1.0e-37 159.8 97 77.3
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 2.3e-37 158.7 97 76.3
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 2.3e-37 158.7 96 76.0
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 4.0e-37 157.9 97 75.3
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 5.2e-37 157.5 100 77.0
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 5.2e-37 157.5 100 77.0
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 6.8e-37 157.1 96 75.0
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 6.8e-37 157.1 97 77.3
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 2.6e-36 155.2 94 74.5
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 4.4e-36 154.5 98 75.5
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 4.4e-36 154.5 97 76.3
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 4.4e-36 154.5 97 76.3
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 5.7e-36 154.1 97 73.2
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.3e-35 152.9 99 73.7
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 1.7e-35 152.5 94 77.7
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 2.2e-35 152.1 96 72.9
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 2.8e-35 151.8 97 75.3
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 3.7e-35 151.4 94 76.6
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 3.7e-35 151.4 97 75.3
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 4.9e-35 151.0 97 73.2
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 6.3e-35 150.6 99 73.7
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 6.3e-35 150.6 97 73.2
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 8.3e-35 150.2 96 75.0
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 1.1e-34 149.8 97 71.1
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 1.1e-34 149.8 97 72.2
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 1.1e-34 149.8 100 71.0
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 1.4e-34 149.4 99 70.7
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 72.2
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 75.3
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 74.2
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 74.2
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 74.2
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 74.2
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 72.2
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.1e-34 148.3 96 71.9
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.1e-34 148.3 96 71.9
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.1e-34 148.3 96 71.9
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 5.4e-34 147.5 100 73.0
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 7.0e-34 147.1 97 73.2
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 9.2e-34 146.7 96 70.8
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 9.2e-34 146.7 96 70.8
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 1.2e-33 146.4 97 72.2
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 1.2e-33 146.4 96 71.9
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 71.1
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 73.2
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 2.0e-33 145.6 97 71.1
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 2.0e-33 145.6 97 71.1
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 2.0e-33 145.6 97 73.2
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 2.0e-33 145.6 98 67.3
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 4.5e-33 144.4 97 73.2
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 5.9e-33 144.1 97 71.1
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.3e-32 142.9 98 69.4
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 1.7e-32 142.5 104 65.4
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.7e-32 142.5 96 71.9
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 3.8e-32 141.4 99 65.7
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 5.0e-32 141.0 96 71.9
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 6.6e-32 140.6 97 68.0
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 6.6e-32 140.6 97 70.1
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 9.5e-31 136.7 97 70.1
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.6e-30 136.0 100 67.0
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 2.8e-30 135.2 94 69.1
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 2.8e-30 135.2 98 68.4
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 4.7e-30 134.4 87 71.3
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 4.7e-30 134.4 97 68.0
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 8.0e-30 133.7 94 64.9
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 1.0e-29 133.3 94 67.0
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 1.0e-29 133.3 100 63.0
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 1.4e-29 132.9 97 68.0
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 4.0e-29 131.3 97 66.0
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 4.0e-29 131.3 94 64.9
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 6.8e-29 130.6 99 66.7
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 4.4e-28 127.9 96 62.5
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 5.7e-28 127.5 100 63.0
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.7e-27 125.9 95 62.1
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 2.2e-27 125.6 80 73.8
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 3.7e-27 124.8 99 62.6
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 8.3e-27 123.6 100 63.0
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 1.4e-26 122.9 99 56.6
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 3.2e-26 121.7 97 61.9
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 4.1e-26 121.3 85 70.6
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 4.1e-26 121.3 85 70.6
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 5.4e-26 120.9 85 65.9
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 7.0e-26 120.6 98 64.3
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 7.8e-25 117.1 89 61.8
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 8.6e-24 113.6 101 58.4
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.5e-23 112.8 101 56.4
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 5.6e-23 110.9 96 55.2
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.2e-22 109.8 93 58.1
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 1.6e-22 109.4 78 66.7
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 1.6e-22 109.4 70 75.7
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 6.8e-21 104.0 94 60.6
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 8.9e-21 103.6 99 53.5
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 8.9e-21 103.6 93 62.4
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 4.6e-17 91.3 99 47.5
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 6.0e-17 90.9 97 54.6
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 1.8e-13 79.3 95 44.2
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 2.6e-12 75.5 100 44.0
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 4.4e-12 74.7 97 43.3
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 2.2e-11 72.4 88 40.9
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 9.2e-10 67.0 41 70.7
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 1.0e-08 63.5 57 61.4
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 1.7e-08 62.8 101 41.6
MCO04G324 Micromonas commoda HOM05D002522 ORTHO05D002744 4.7e-06 54.7 61 44.3
Oeu016235.1 Olea europaea HOM05D006087 ORTHO05D007479 6.2e-06 54.3 44 65.9


User provided reference genes

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