Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.9e-103 378.6 200 100.0
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.9e-103 378.6 200 100.0
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.9e-103 378.6 200 100.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.8e-97 359.4 195 96.4
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 5.3e-97 357.8 203 95.6
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.2e-87 325.9 196 88.3
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-85 320.1 194 88.1
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-85 320.1 194 88.1
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 7.9e-85 317.4 194 87.6
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.1e-83 313.5 194 88.1
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.1e-83 313.5 207 86.0
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.5e-83 313.2 194 88.7
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 3.3e-83 312.0 178 91.0
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 3.3e-83 312.0 178 91.0
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 5.7e-83 311.2 196 86.2
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.4e-81 305.8 192 87.5
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 7.9e-77 290.8 194 78.9
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.7e-74 283.1 206 78.6
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 2.6e-72 275.8 192 77.1
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.6e-64 250.0 195 69.7
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.0e-63 247.3 195 69.2
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 2.9e-63 245.7 148 89.9
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 2.9e-63 245.7 189 68.8
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 2.5e-62 242.7 192 66.7
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 9.4e-62 240.7 191 67.5
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 4.7e-61 238.4 198 65.2
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 4.7e-61 238.4 188 68.6
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 6.1e-61 238.0 196 64.3
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 8.0e-61 237.7 188 69.1
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.0e-60 237.3 185 66.5
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.4e-60 236.9 188 68.6
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.8e-60 236.5 196 63.8
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 4.0e-60 235.3 192 65.1
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 5.2e-60 235.0 196 65.3
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 8.8e-60 234.2 220 61.8
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.5e-59 233.4 192 64.1
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.5e-59 233.4 195 65.1
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.5e-59 233.4 192 66.1
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.0e-59 233.0 205 64.9
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 2.6e-59 232.6 195 65.1
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.6e-59 232.6 188 64.9
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 4.4e-59 231.9 192 65.6
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 7.5e-59 231.1 192 66.7
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 9.7e-59 230.7 184 67.9
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.3e-58 230.3 205 64.9
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.3e-58 230.3 185 64.3
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.7e-58 229.9 185 65.4
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.3e-58 228.0 195 61.0
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 8.2e-58 227.6 192 63.5
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.1e-57 227.3 188 64.9
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.4e-57 226.9 195 64.6
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.4e-57 226.1 198 63.6
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 3.1e-57 225.7 187 64.2
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 4.1e-57 225.3 191 64.4
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 4.1e-57 225.3 188 66.0
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 7.0e-57 224.6 195 66.2
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 9.1e-57 224.2 188 64.9
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 9.1e-57 224.2 188 64.9
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.6e-56 223.4 188 65.4
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.7e-56 222.6 195 62.6
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.5e-56 222.2 199 61.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 7.7e-56 221.1 195 62.6
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.0e-55 220.7 187 62.0
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.3e-55 220.3 207 60.9
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.3e-55 220.3 195 64.1
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.7e-55 219.9 191 60.7
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 2.2e-55 219.5 199 59.3
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.2e-55 219.5 188 61.7
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 3.8e-55 218.8 185 63.2
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 3.8e-55 218.8 197 62.9
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.0e-55 218.4 199 59.3
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 6.5e-55 218.0 187 62.6
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.2e-54 215.7 185 62.7
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 4.2e-54 215.3 188 59.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 5.5e-54 214.9 185 64.3
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 5.5e-54 214.9 195 61.0
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.2e-53 213.8 188 60.6
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 4.7e-53 211.8 189 61.4
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.4e-52 210.3 185 63.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.4e-52 210.3 195 61.5
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.3e-52 209.5 178 62.4
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 5.2e-52 208.4 188 60.1
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 6.8e-52 208.0 178 61.8
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 2.0e-51 206.5 187 59.9
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 5.7e-51 204.9 195 59.5
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 7.5e-51 204.5 226 52.7
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 9.8e-51 204.1 192 58.9
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.3e-50 203.8 189 59.3
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.8e-50 202.6 186 57.5
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 6.3e-50 201.4 204 55.4
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 9.1e-49 197.6 194 58.8
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 4.5e-48 195.3 212 52.8
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.3e-47 193.7 143 69.9
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.9e-47 192.6 143 69.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 5.0e-47 191.8 191 58.1
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.1e-46 190.7 185 59.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 4.2e-46 188.7 187 56.1
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 7.2e-46 188.0 239 49.8
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.8e-45 186.0 187 54.0
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 8.0e-45 184.5 141 69.5
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.0e-44 184.1 167 58.7
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.8e-44 183.3 144 65.3
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 4.0e-44 182.2 143 65.0
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 3.4e-43 179.1 117 74.4
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 3.4e-43 179.1 181 53.0
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.4e-41 172.9 117 71.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 3.1e-41 172.6 112 74.1
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 2.0e-40 169.9 166 54.2
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.7e-39 166.8 108 75.0
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.8e-39 165.6 110 69.1
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 3.3e-38 162.5 110 70.0
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 6.1e-37 158.3 161 57.1
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 8.9e-36 154.5 141 63.1
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.1e-33 147.5 99 77.8
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.8e-33 146.7 197 49.2
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 6.8e-28 128.3 101 59.4
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.0e-27 126.7 88 71.6
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.0e-27 126.7 83 74.7
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.4e-25 120.6 88 68.2
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 4.1e-25 119.0 128 54.7
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.2e-24 117.5 119 58.0
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 2.7e-24 116.3 147 42.9
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.5e-24 115.9 182 40.1
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 4.3e-22 109.0 186 36.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 8.1e-21 104.8 69 73.9
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.0e-20 102.4 152 46.7
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.7e-18 95.9 104 52.9
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 3.7e-18 95.9 125 45.6
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.4e-17 94.0 110 42.7
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 3.5e-16 89.4 59 67.8
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 4.6e-16 89.0 156 39.7
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.5e-14 83.2 142 38.7
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 9.5e-14 81.3 82 56.1
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.6e-13 80.5 47 78.7
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 3.6e-13 79.3 83 50.6


User provided reference genes

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