Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p24840 Brassica napus HOM05D000134 ORTHO05D027612 5.3e-57 224.2 117 100.0
BolC8t47141H Brassica oleracea HOM05D000134 ORTHO05D000168 1.7e-42 176.0 147 69.4
BcaB03g13362 Brassica carinata HOM05D000134 ORTHO05D027612 1.8e-41 172.6 149 69.1
BcaC06g34765 Brassica carinata HOM05D000134 ORTHO05D027612 4.5e-40 167.9 85 100.0
BolC7t43010H Brassica oleracea HOM05D000134 ORTHO05D027612 3.6e-37 158.3 82 100.0
BraA06t23705Z Brassica rapa HOM05D000134 ORTHO05D000168 1.1e-33 146.7 151 59.6
BolC5t29355H Brassica oleracea HOM05D000134 ORTHO05D000168 2.4e-33 145.6 157 57.3
A08p35420 Brassica napus HOM05D000134 ORTHO05D000168 9.2e-33 143.7 90 84.4
BraA08t35448Z Brassica rapa HOM05D000134 ORTHO05D000168 9.2e-33 143.7 90 84.4
C05p05930 Brassica napus HOM05D000134 ORTHO05D000168 1.2e-32 143.3 157 56.7
C08p03410 Brassica napus HOM05D000134 ORTHO05D000168 3.5e-32 141.7 94 83.0
AT1G07870 Arabidopsis thaliana HOM05D000134 ORTHO05D000168 7.8e-32 140.6 155 58.1
AL1G18150 Arabidopsis lyrata HOM05D000134 ORTHO05D000168 3.3e-30 135.2 155 57.4
Thhalv10007727m.g Eutrema salsugineum HOM05D000134 ORTHO05D000168 9.5e-30 133.7 155 56.8
BraA09t41953Z Brassica rapa HOM05D000134 ORTHO05D000168 1.6e-29 132.9 156 55.1
A09p66150 Brassica napus HOM05D000134 ORTHO05D000168 6.1e-29 131.0 156 54.5
Sp1g06550 Schrenkiella parvula HOM05D000134 ORTHO05D000168 1.4e-28 129.8 158 57.0
Aa31sc175G20 Aethionema arabicum HOM05D000134 ORTHO05D000168 4.0e-28 128.3 154 53.9
BcaC07g41972 Brassica carinata HOM05D000134 ORTHO05D000168 2.6e-27 125.6 156 52.6
C08p50310 Brassica napus HOM05D000134 ORTHO05D000168 2.6e-27 125.6 156 52.6
BolC8t52560H Brassica oleracea HOM05D000134 ORTHO05D000168 2.6e-27 125.6 156 52.6
Carub.0001s0721 Capsella rubella HOM05D000134 ORTHO05D000168 3.4e-27 125.2 160 54.4
CARHR007680 Cardamine hirsuta HOM05D000134 ORTHO05D000168 3.4e-27 125.2 158 51.9
THA.LOC104800628 Tarenaya hassleriana HOM05D000134 ORTHO05D000168 1.6e-24 116.3 164 52.4
THA.LOC104826350 Tarenaya hassleriana HOM05D000134 ORTHO05D000168 6.0e-24 114.4 164 51.2
A06p04990 Brassica napus HOM05D000134 ORTHO05D000168 4.7e-21 104.8 149 49.7
Thhalv10016694m.g Eutrema salsugineum HOM05D000134 ORTHO05D000168 6.2e-21 104.4 153 46.4
AT2G28590 Arabidopsis thaliana HOM05D000134 ORTHO05D000168 1.2e-19 100.1 151 47.7
AL4G23080 Arabidopsis lyrata HOM05D000134 ORTHO05D000168 1.5e-19 99.8 156 46.8
Cpa.g.sc139.22 Carica papaya HOM05D000134 ORTHO05D000168 1.5e-19 99.8 161 44.1
Aa31LG5G7640 Aethionema arabicum HOM05D000134 ORTHO05D000168 3.4e-19 98.6 155 49.0
Carub.0004s0955 Capsella rubella HOM05D000134 ORTHO05D000168 7.5e-19 97.4 158 44.3
COL.COLO4_18398 Corchorus olitorius HOM05D000134 ORTHO05D000168 2.9e-18 95.5 150 44.0
Manes.11G138300 Manihot esculenta HOM05D000134 ORTHO05D000168 2.9e-18 95.5 148 45.3
Potri.009G026500 Populus trichocarpa HOM05D000134 ORTHO05D000168 1.1e-17 93.6 151 44.4
QL01p035463 Quercus lobata HOM05D000134 ORTHO05D000168 1.1e-17 93.6 160 46.2
C03p31430 Brassica napus HOM05D000134 ORTHO05D000168 5.4e-17 91.3 157 42.0
CARHR121610 Cardamine hirsuta HOM05D000134 ORTHO05D000168 7.0e-17 90.9 154 44.2
BcaB01g03111 Brassica carinata HOM05D000134 ORTHO05D000168 9.2e-17 90.5 167 41.3
A03p26300 Brassica napus HOM05D000134 ORTHO05D000168 1.6e-16 89.7 157 42.7
BolC3t15490H Brassica oleracea HOM05D000134 ORTHO05D000168 1.6e-16 89.7 168 44.0
BraA03t11844Z Brassica rapa HOM05D000134 ORTHO05D000168 2.7e-16 89.0 168 44.0
Thecc.09G334900 Theobroma cacao HOM05D000134 ORTHO05D000168 2.7e-16 89.0 156 42.3
BcaC01g04983 Brassica carinata HOM05D000134 ORTHO05D000168 3.5e-16 88.6 158 41.1
Haze_23971 Corylus avellana HOM05D000134 ORTHO05D000168 3.5e-16 88.6 152 44.1
Manes.04G027500 Manihot esculenta HOM05D000134 ORTHO05D000168 7.8e-16 87.4 148 43.2
Potri.001G234100 Populus trichocarpa HOM05D000134 ORTHO05D000168 1.0e-15 87.0 151 45.0
Sp4g11410 Schrenkiella parvula HOM05D000134 ORTHO05D000168 3.9e-15 85.1 152 40.1
Duzib150G1111 Durio zibethinus HOM05D000134 ORTHO05D000168 1.9e-14 82.8 155 41.3
Sabra09G0017600 Salix brachista HOM05D000134 ORTHO05D000168 2.5e-14 82.4 153 42.5
Gohir.D13G235200 Gossypium hirsutum HOM05D000134 ORTHO05D000168 9.5e-14 80.5 157 40.1
Gorai.013G265900 Gossypium raimondii HOM05D000134 ORTHO05D000168 9.5e-14 80.5 157 40.1
Gohir.A13G229600 Gossypium hirsutum HOM05D000134 ORTHO05D000168 1.6e-13 79.7 157 40.1
ClCG03G002110 Citrullus lanatus HOM05D000134 ORTHO05D000168 3.6e-13 78.6 157 40.1
MELO3C026851.2 Cucumis melo HOM05D000134 ORTHO05D000168 1.1e-12 77.0 158 41.8
BcaB03g16732 Brassica carinata HOM05D025671 ORTHO05D000401 1.4e-12 76.6 69 73.9
CiPaw.14G075200 Carya illinoinensis HOM05D000134 ORTHO05D000168 3.1e-12 75.5 154 39.0
CsaV3_1G012770 Cucumis sativus L. HOM05D000134 ORTHO05D000168 3.1e-12 75.5 158 41.8
CSS0003959 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D000168 6.8e-12 74.3 144 38.9
Sed0016099 Sechium edule HOM05D000134 ORTHO05D000168 6.8e-12 74.3 157 39.5
CANSAT54G0670 Cannabis sativa HOM05D000134 ORTHO05D000168 8.9e-12 73.9 148 39.9
CiPaw.13G103900 Carya illinoinensis HOM05D000134 ORTHO05D000168 8.9e-12 73.9 150 38.0
MD11G1120000 Malus domestica HOM05D000134 ORTHO05D000168 1.2e-11 73.6 163 37.4
Glyma.12G074000 Glycine max HOM05D000134 ORTHO05D000168 2.6e-11 72.4 148 41.2
Glyma.11G147944 Glycine max HOM05D000134 ORTHO05D000168 4.4e-11 71.6 148 39.2
VMungo1127G1961 Vigna mungo HOM05D000134 ORTHO05D000168 4.4e-11 71.6 151 39.7
Sabra16G0140400 Salix brachista HOM05D000134 ORTHO05D000168 5.8e-11 71.2 113 45.1
Atru.chr3.3752 Acer truncatum HOM05D000134 ORTHO05D000168 7.5e-11 70.9 151 38.4
Prupe.6G090100 Prunus persica HOM05D000134 ORTHO05D000168 1.3e-10 70.1 148 36.5
Ciclev10028876m.g Citrus clementina HOM05D000134 ORTHO05D000168 1.7e-10 69.7 144 36.8
Psat5g281440 Pisum sativum HOM05D000134 ORTHO05D000168 2.2e-10 69.3 144 37.5
Medtr2g095880 Medicago truncatula HOM05D000134 ORTHO05D000168 3.7e-10 68.6 149 38.9
TPR.G11564 Trifolium pratense HOM05D000134 ORTHO05D000168 4.9e-10 68.2 146 37.7
Phvul.011G070500 Phaseolus vulgaris HOM05D000134 ORTHO05D000168 8.3e-10 67.4 151 38.4
FAN16G3336 Fragaria x ananassa HOM05D000134 ORTHO05D000168 1.1e-09 67.0 154 35.7
Ca_01367_v3 Cicer arietinum L. HOM05D000134 ORTHO05D000168 1.9e-09 66.2 144 38.2
Glyma.13G330200 Glycine max HOM05D000134 ORTHO05D000168 2.4e-09 65.9 147 37.4
Cfa011400 Carpinus fangiana HOM05D000134 ORTHO05D000168 3.2e-09 65.5 184 33.2
Lj3g0018409 Lotus japonicus HOM05D000134 ORTHO05D000168 3.2e-09 65.5 151 37.1
MD03G1107300 Malus domestica HOM05D000134 ORTHO05D000168 7.1e-09 64.3 151 36.4
Lalb_Chr19g0137561 Lupinus albus HOM05D000134 ORTHO05D000168 9.2e-09 63.9 148 35.8
Lalb_Chr22g0350121 Lupinus albus HOM05D000134 ORTHO05D000168 9.2e-09 63.9 149 34.9
arahy.Tifrunner.gnm1.ann1.FYI4AT Arachis hypogaea HOM05D000134 ORTHO05D000168 1.2e-08 63.5 104 42.3
Dinv06347 Davidia involucrata HOM05D000134 ORTHO05D000168 1.2e-08 63.5 148 37.8
FAN25G2245 Fragaria x ananassa HOM05D000134 ORTHO05D000168 1.2e-08 63.5 119 39.5
arahy.Tifrunner.gnm1.ann1.X45CIM Arachis hypogaea HOM05D000134 ORTHO05D000168 1.6e-08 63.2 148 36.5
RcHm_v2.0_Chr5g0061791 Rosa chinensis HOM05D000134 ORTHO05D000168 1.6e-08 63.2 118 39.0
Lalb_Chr24g0394351 Lupinus albus HOM05D000134 ORTHO05D000168 2.1e-08 62.8 141 36.9
TWI31G1128 Tripterygium wilfordii HOM05D000134 ORTHO05D000168 2.1e-08 62.8 148 35.1
Lalb_Chr01g0003971 Lupinus albus HOM05D000134 ORTHO05D000168 2.7e-08 62.4 148 37.2
arahy.Tifrunner.gnm1.ann1.EZE0FP Arachis hypogaea HOM05D000134 ORTHO05D000168 3.5e-08 62.0 147 36.7
PGR119G1699 Punica granatum HOM05D000134 ORTHO05D000168 3.5e-08 62.0 155 35.5
arahy.Tifrunner.gnm1.ann1.IRA385 Arachis hypogaea HOM05D000134 ORTHO05D000168 4.6e-08 61.6 131 35.1
Glyma.15G043800 Glycine max HOM05D000134 ORTHO05D000168 6.0e-08 61.2 154 37.7
vmacro03144 Vaccinium macrocarpon HOM05D000134 ORTHO05D000168 6.0e-08 61.2 144 35.4
Lj3g0026348 Lotus japonicus HOM05D000134 ORTHO05D000168 1.3e-07 60.1 149 36.9
VMungo1080G0721 Vigna mungo HOM05D000134 ORTHO05D000168 1.7e-07 59.7 148 33.8
FAN21G2214 Fragaria x ananassa HOM05D000134 ORTHO05D000168 2.3e-07 59.3 154 33.1
Hma1.2p1_2050F.1_g312490 Hydrangea macrophylla HOM05D000134 ORTHO05D000168 2.3e-07 59.3 152 33.6
Duzib106G1779 Durio zibethinus HOM05D000134 ORTHO05D000168 3.0e-07 58.9 147 34.0
GSVIVG01025085001 Vitis vinifera HOM05D000134 ORTHO05D000168 3.0e-07 58.9 163 33.1
TAR623G0522 Trochodendron aralioides HOM05D000134 ORTHO05D000168 3.9e-07 58.5 143 36.4
Lj1A180T32 Lonicera japonica HOM05D000134 ORTHO05D000168 5.1e-07 58.2 150 32.0
CSS0009660 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D000168 8.6e-07 57.4 143 35.0
CSS0048453 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D000168 1.5e-06 56.6 143 34.3
RhsimUnG0139500 Rhododendron simsii HOM05D000134 ORTHO05D000168 2.5e-06 55.8 145 33.1
TAR636G1509 Trochodendron aralioides HOM05D000134 ORTHO05D000168 4.3e-06 55.1 143 34.3
Eucgr.J01139 Eucalyptus grandis HOM05D000134 ORTHO05D000168 7.3e-06 54.3 141 33.3
PGR102G0833 Punica granatum HOM05D000134 ORTHO05D000168 7.3e-06 54.3 155 33.5


User provided reference genes

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