Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.5e-121 438.7 214 100.0
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.5e-121 438.7 214 100.0
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.5e-118 429.5 214 97.2
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.0e-118 429.1 214 97.2
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-116 422.5 214 95.8
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.7e-114 416.0 203 100.0
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 3.0e-106 388.7 218 89.0
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 5.1e-106 387.9 218 88.1
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 3.3e-105 385.2 218 88.1
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 2.1e-104 382.5 218 87.6
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.1e-103 380.2 218 86.2
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.8e-103 379.4 217 87.1
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 2.9e-101 372.1 218 83.9
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 8.4e-101 370.5 219 84.5
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 8.4e-101 370.5 219 84.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.2e-100 368.6 218 83.5
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 7.1e-100 367.5 218 82.6
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.1e-99 365.9 220 84.1
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 8.7e-98 360.5 210 86.2
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.4e-97 357.5 218 81.2
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 3.1e-95 352.1 219 79.5
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 78.2
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 6.5e-93 344.4 219 77.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.4e-92 343.2 219 78.5
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 2.7e-91 339.0 219 78.1
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.0e-90 337.0 219 77.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.9e-89 332.8 219 76.7
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.9e-89 332.8 218 75.7
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 3.7e-88 328.6 223 77.6
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 3.7e-88 328.6 223 77.6
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 5.3e-87 324.7 221 73.3
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 9.0e-87 323.9 221 74.2
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 2.0e-86 322.8 224 73.7
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 2.6e-86 322.4 218 77.5
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.6e-86 322.4 224 73.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.4e-86 322.0 224 73.2
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 3.4e-86 322.0 221 72.9
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.9e-86 321.2 225 73.3
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.7e-86 320.9 224 73.7
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.3e-85 320.1 237 70.5
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 72.9
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.5e-84 314.7 220 71.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 5.5e-84 314.7 221 72.4
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 5.5e-84 314.7 221 72.4
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 7.2e-84 314.3 219 71.7
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 9.4e-84 313.9 222 71.6
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 9.4e-84 313.9 192 79.2
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.2e-83 313.5 222 71.2
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.6e-83 313.2 220 72.3
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 2.1e-83 312.8 222 71.2
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.1e-83 312.8 220 70.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.6e-83 312.0 192 78.6
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 3.6e-83 312.0 220 71.8
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 4.6e-83 311.6 221 71.9
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.6e-83 311.6 221 71.9
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 4.6e-83 311.6 221 71.5
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 4.6e-83 311.6 219 71.7
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 6.1e-83 311.2 220 70.9
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 6.1e-83 311.2 220 71.4
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 6.1e-83 311.2 221 72.4
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.4e-82 310.1 221 71.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 3.9e-82 308.5 220 70.0
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 5.1e-82 308.1 220 70.9
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 8.8e-82 307.4 221 70.6
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 8.8e-82 307.4 221 70.6
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 2.0e-81 306.2 218 69.7
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.3e-81 305.1 220 68.2
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 5.7e-81 304.7 221 69.2
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 9.7e-81 303.9 221 71.9
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 9.7e-81 303.9 221 70.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 9.7e-81 303.9 192 77.1
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.7e-80 303.1 221 71.0
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.8e-80 301.6 220 70.9
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 4.8e-80 301.6 192 78.1
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 4.8e-80 301.6 221 69.2
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 8.2e-80 300.8 192 76.6
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 1.1e-79 300.4 221 68.8
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.4e-79 299.3 195 75.9
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 9.1e-79 297.4 192 75.0
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.2e-78 297.0 220 67.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.5e-78 296.6 221 68.3
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 3.4e-78 295.4 220 67.7
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.4e-78 295.4 195 73.3
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 7.7e-78 294.3 221 68.8
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.0e-77 293.9 220 68.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.7e-77 293.1 220 68.6
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.9e-77 292.4 220 69.1
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 2.9e-77 292.4 220 69.1
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 3.8e-77 292.0 199 73.4
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.9e-76 289.7 219 67.6
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.2e-76 288.9 219 67.1
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.2e-76 288.9 219 67.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 9.4e-76 287.3 230 66.1
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 9.4e-76 287.3 222 66.2
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.1e-75 286.2 222 65.3
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 3.9e-74 282.0 221 65.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.9e-74 282.0 221 67.0
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 3.9e-74 282.0 232 64.7
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 6.7e-74 281.2 197 72.1
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 6.7e-74 281.2 194 72.7
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.6e-73 279.3 193 71.5
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.6e-73 279.3 221 65.2
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 4.4e-73 278.5 198 71.7
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 5.7e-73 278.1 221 64.7
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 7.4e-73 277.7 193 71.5
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 9.7e-73 277.3 193 70.5
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.3e-72 276.9 219 61.6
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.4e-71 273.5 211 65.9
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 6.5e-69 264.6 209 64.1
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.5e-68 262.7 217 59.4
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 3.6e-67 258.8 301 50.5
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.8e-66 256.5 219 57.1
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.4e-65 251.9 203 63.5
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.7e-64 250.0 217 57.6
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 8.2e-64 247.7 191 64.9
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.1e-63 245.7 215 58.6
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.1e-63 245.4 222 61.7
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.2e-62 243.8 221 54.3
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 4.5e-62 241.9 215 58.6
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 6.5e-61 238.0 290 49.0
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.6e-59 233.4 217 56.7
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.2e-56 223.0 194 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.8e-56 222.6 217 52.5
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 3.7e-56 222.2 221 51.6
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.8e-55 219.9 172 65.7
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 7.0e-55 218.0 179 64.8
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.2e-54 217.2 169 66.9
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.9e-53 212.6 192 56.2
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 2.7e-51 206.1 164 65.9
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.5e-49 198.0 168 61.9
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 8.3e-48 194.5 195 55.9
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.8e-47 193.4 158 63.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.4e-42 177.2 215 47.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.3e-42 176.4 93 84.9
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.4e-41 172.6 157 53.5
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 3.7e-40 169.1 186 51.1
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.2e-39 166.0 163 54.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 2.2e-32 143.3 218 34.4
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.6e-30 137.1 228 36.4
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.5e-30 136.0 84 76.2
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.5e-28 130.6 139 51.1
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 5.6e-28 128.6 84 66.7
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.3e-26 123.2 214 34.6
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 3.9e-21 105.9 100 62.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.7e-19 99.0 137 41.6
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.4e-18 97.4 76 68.4
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.0e-14 82.0 92 48.9
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.4e-07 60.8 137 35.0
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 7.1e-07 58.5 183 23.0


User provided reference genes

Program Settings