Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 6.8e-114 414.1 220 100.0
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 6.8e-114 414.1 220 100.0
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 5.4e-111 404.4 222 98.2
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 2.4e-106 389.0 220 93.2
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 4.0e-106 388.3 220 93.2
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.9e-93 345.1 220 87.7
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 4.3e-92 341.7 222 86.0
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 6.2e-91 337.8 219 85.8
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 9.3e-87 323.9 221 81.0
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.6e-86 323.2 215 81.9
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 3.5e-86 322.0 215 81.9
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.8e-85 319.7 224 80.8
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 1.9e-84 316.2 223 81.2
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 9.6e-84 313.9 222 81.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 6.9e-82 307.8 221 81.0
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 9.0e-82 307.4 228 78.9
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 1.9e-79 299.7 221 78.7
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 1.6e-78 296.6 221 77.8
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.8e-66 256.5 222 69.8
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.8e-61 240.0 219 62.6
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 6.1e-46 188.3 210 53.8
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 1.8e-45 186.8 215 51.6
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.2e-44 184.1 199 53.8
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.5e-44 183.7 199 52.8
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 2.6e-44 183.0 210 51.0
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 5.7e-44 181.8 190 55.3
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 9.7e-44 181.0 194 53.1
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.3e-43 180.6 216 50.5
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 2.2e-43 179.9 213 53.1
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 2.8e-43 179.5 202 54.5
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 3.7e-43 179.1 182 58.2
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.8e-43 178.7 209 51.2
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 6.3e-43 178.3 202 55.0
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 1.6e-41 173.7 194 53.1
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 2.0e-41 173.3 190 52.6
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.5e-41 172.6 203 52.2
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 7.7e-41 171.4 228 48.2
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.0e-40 171.0 202 49.5
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 2.2e-40 169.9 200 49.5
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 5.0e-40 168.7 191 53.4
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 8.5e-40 167.9 202 48.5
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.5e-39 167.2 209 47.4
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 5.5e-39 165.2 194 52.6
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 5.5e-39 165.2 206 50.0
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.6e-38 163.7 190 50.5
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.6e-38 163.7 202 50.0
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.6e-38 163.7 199 49.2
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.6e-38 163.7 220 48.2
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.1e-38 163.3 201 48.3
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.1e-38 163.3 201 48.3
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 4.7e-38 162.2 191 52.4
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.1e-38 161.8 220 46.4
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.4e-37 160.6 187 50.3
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 1.4e-37 160.6 190 49.5
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.8e-37 160.2 196 48.5
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 4.0e-37 159.1 203 47.8
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 5.2e-37 158.7 191 50.3
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 5.2e-37 158.7 188 51.1
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 8.8e-37 157.9 202 49.5
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.2e-36 157.5 189 49.7
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.2e-36 157.5 220 45.9
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.2e-36 157.5 213 47.9
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 2.0e-36 156.8 193 51.3
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 2.0e-36 156.8 213 46.0
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.6e-36 156.4 193 51.3
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.6e-36 156.4 190 48.9
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 4.4e-36 155.6 167 55.1
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 4.4e-36 155.6 211 46.4
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.7e-36 155.2 193 50.8
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 5.7e-36 155.2 186 46.2
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 7.5e-36 154.8 192 49.0
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 7.5e-36 154.8 225 44.4
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 9.8e-36 154.5 214 43.5
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.3e-35 154.1 203 44.8
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-35 153.7 193 50.8
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.7e-35 153.7 203 46.8
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 1.7e-35 153.7 198 51.5
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.2e-35 153.3 196 46.9
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 2.2e-35 153.3 215 46.5
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 2.8e-35 152.9 204 48.0
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.8e-35 152.9 197 47.2
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.8e-35 152.9 192 50.5
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 3.7e-35 152.5 194 46.4
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 4.8e-35 152.1 192 50.0
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 8.3e-35 151.4 193 46.6
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.1e-34 151.0 192 46.9
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.1e-34 151.0 192 50.0
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.8e-34 150.2 198 45.5
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.1e-34 149.4 191 47.6
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 4.1e-34 149.1 214 43.5
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 5.4e-34 148.7 220 42.7
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 7.0e-34 148.3 223 41.3
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.6e-33 147.1 184 47.8
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 2.0e-33 146.7 216 43.5
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 5.9e-33 145.2 159 55.3
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 5.9e-33 145.2 190 46.8
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 7.7e-33 144.8 188 46.8
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 3.8e-32 142.5 207 44.4
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.1e-31 141.0 176 47.2
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 1.5e-31 140.6 229 42.8
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.5e-31 138.7 191 42.4
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 1.2e-30 137.5 272 37.9
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 2.8e-30 136.3 188 49.5
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.4e-29 134.0 204 42.6
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 3.0e-29 132.9 183 44.3
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 4.0e-29 132.5 220 43.6
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 5.2e-29 132.1 187 45.5
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 8.8e-29 131.3 161 46.0
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.2e-25 120.9 263 36.9
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 3.3e-23 112.8 191 40.8
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 3.0e-21 106.3 169 42.6
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.2e-18 96.3 112 48.2
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 7.0e-18 95.1 135 43.0
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 1.6e-17 94.0 295 30.2
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 3.5e-17 92.8 221 33.5
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 5.9e-17 92.0 71 64.8
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-16 90.5 98 52.0
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 4.7e-14 82.4 88 51.1
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 2.2e-11 73.6 203 30.0
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.5e-07 60.8 56 53.6
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 2.5e-07 60.1 218 28.0
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 2.5e-07 60.1 156 33.3
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 2.1e-06 57.0 52 55.8
CBR_g41721 Chara braunii HOM05D006240 ORTHO05D007709 2.8e-06 56.6 196 28.6


User provided reference genes

Program Settings