Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 8.7e-134 480.3 246 100.0
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 8.7e-134 480.3 246 100.0
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.9e-133 479.2 246 99.6
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.9e-133 479.2 246 99.6
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 6.2e-132 474.2 246 98.4
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 8.1e-132 473.8 246 98.4
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 4.9e-129 464.5 246 97.6
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 2.5e-125 452.2 246 94.7
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 2.5e-125 452.2 246 94.7
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.6e-116 422.9 246 87.8
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 2.4e-115 419.1 239 88.7
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 4.1e-115 418.3 246 87.4
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 2.6e-114 415.6 246 85.8
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 4.5e-114 414.8 240 87.1
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.3e-109 398.7 224 90.2
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.8e-102 376.3 247 78.9
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.8e-94 349.7 235 72.8
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 2.0e-93 346.3 232 72.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.0e-93 346.3 229 71.6
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 4.4e-93 345.1 232 72.8
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 5.7e-93 344.7 225 73.3
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 5.7e-93 344.7 234 70.5
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 9.7e-93 344.0 240 69.6
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.3e-92 343.6 239 67.4
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 6.3e-92 341.3 223 71.7
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 8.2e-92 340.9 224 70.1
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 1.4e-91 340.1 239 67.8
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.4e-91 339.3 224 69.6
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 2.4e-91 339.3 224 70.5
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 2.4e-91 339.3 240 68.3
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 4.1e-91 338.6 224 72.8
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 4.1e-91 338.6 229 70.3
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 9.1e-91 337.4 240 67.9
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.2e-90 337.0 229 70.3
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 2.6e-90 335.9 223 69.5
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 3.5e-90 335.5 224 71.9
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 5.9e-90 334.7 248 66.5
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 7.7e-90 334.3 240 66.2
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.0e-89 334.0 229 69.4
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.0e-89 334.0 240 66.7
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.3e-89 333.6 224 69.2
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.7e-89 333.2 251 64.9
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 6.5e-89 331.3 224 71.0
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 6.5e-89 331.3 223 70.4
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 6.5e-89 331.3 229 67.2
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.1e-88 330.5 229 69.0
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.1e-88 330.5 230 69.1
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-88 330.5 229 69.4
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.5e-88 330.1 229 69.0
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 1.5e-88 330.1 224 71.0
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.5e-88 330.1 230 68.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 2.5e-88 329.3 229 68.6
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-88 329.3 229 68.6
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 2.5e-88 329.3 239 64.9
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 2.5e-88 329.3 224 69.2
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 4.2e-88 328.6 228 68.9
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 5.5e-88 328.2 246 65.0
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 7.2e-88 327.8 228 68.9
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 9.4e-88 327.4 224 68.3
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.2e-87 327.0 224 68.8
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.2e-87 327.0 228 68.9
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 4.7e-87 325.1 241 66.0
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 4.7e-87 325.1 242 64.9
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 8.0e-87 324.3 229 67.2
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 1.0e-86 323.9 228 68.0
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.4e-86 323.6 228 67.1
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 3.0e-86 322.4 240 65.8
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 3.0e-86 322.4 240 65.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 4.0e-86 322.0 229 68.1
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 5.2e-86 321.6 239 67.4
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 5.2e-86 321.6 249 63.9
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 5.2e-86 321.6 223 68.2
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 8.8e-86 320.9 223 69.1
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 8.8e-86 320.9 224 69.2
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 7.5e-85 317.8 228 65.8
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.7e-84 316.6 233 67.8
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.2e-84 316.2 223 68.6
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.2e-84 316.2 227 68.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.7e-84 315.5 223 67.7
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 4.8e-84 315.1 224 65.2
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 6.3e-84 314.7 224 67.0
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 6.3e-84 314.7 232 65.9
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 4.1e-83 312.0 227 66.5
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 7.0e-83 311.2 231 65.8
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.1e-80 303.9 262 59.9
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 7.2e-80 301.2 239 61.9
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.7e-79 299.3 217 66.4
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 6.8e-78 294.7 266 58.6
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 5.9e-74 281.6 196 66.8
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 7.2e-72 274.6 225 59.6
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 9.4e-72 274.2 231 62.8
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 6.1e-71 271.6 196 66.3
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 3.4e-69 265.8 242 56.6
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 5.7e-69 265.0 221 61.1
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 3.3e-64 249.2 176 68.8
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 6.1e-63 245.0 231 55.4
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 2.6e-61 239.6 228 52.6
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 2.4e-59 233.0 185 63.8
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 8.6e-57 224.6 150 70.0
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 3.3e-56 222.6 229 53.3
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 4.3e-56 222.2 243 49.4
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 8.0e-55 218.0 229 51.1
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.0e-50 203.4 156 63.5
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.2e-47 194.1 261 41.0
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 2.6e-45 186.4 138 63.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 2.7e-42 176.4 125 65.6
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.3e-41 174.1 240 41.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 5.1e-41 172.2 200 48.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.5e-40 170.6 223 40.4
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 1.4e-38 164.1 224 42.4
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 5.8e-37 158.7 198 46.5
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 1.9e-32 143.7 172 45.3
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 2.4e-30 136.7 261 35.2
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 4.6e-26 122.5 80 67.5
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 2.0e-21 107.1 111 50.5
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 3.9e-17 92.8 61 68.9
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 6.2e-15 85.5 57 68.4
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 5.3e-14 82.4 127 37.8
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 6.4e-12 75.5 56 64.3
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 4.2e-11 72.8 65 55.4
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 2.3e-09 67.0 50 60.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 4.3e-08 62.8 47 53.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.6e-07 60.8 205 25.4
C05p20820 Brassica napus HOM05D006717 ORTHO05D008139 6.2e-07 58.9 30 86.7
BolC5t30781H Brassica oleracea HOM05D006717 ORTHO05D008139 8.1e-07 58.5 30 86.7
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 5.3e-06 55.8 39 56.4
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 6.9e-06 55.5 39 66.7


User provided reference genes

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