Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.9e-92 342.4 166 100.0
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 4.5e-86 321.2 166 94.6
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 6.2e-67 257.7 124 100.0
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 6.2e-67 257.7 124 100.0
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.8e-66 256.1 124 99.2
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.0e-65 252.7 124 96.8
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 6.0e-62 241.1 125 92.0
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 6.0e-62 241.1 125 92.0
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 1.0e-61 240.4 126 91.3
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 1.0e-61 240.4 126 91.3
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 2.3e-61 239.2 137 85.4
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 2.3e-61 239.2 124 91.9
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 5.1e-61 238.0 124 91.9
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 7.3e-60 234.2 124 90.3
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 7.3e-60 234.2 124 89.5
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 9.6e-60 233.8 124 87.9
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 8.1e-59 230.7 124 88.7
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 1.1e-58 230.3 113 97.3
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.1e-58 230.3 124 86.3
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 5.8e-57 224.6 124 84.7
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.9e-56 222.2 124 86.3
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.2e-55 218.4 124 80.6
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.6e-54 216.5 124 80.6
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 2.1e-54 216.1 124 81.5
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 3.5e-54 215.3 124 80.6
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 1.0e-53 213.8 124 80.6
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.3e-53 213.4 124 80.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 6.6e-53 211.1 124 80.6
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 8.7e-53 210.7 124 79.8
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 8.7e-53 210.7 124 79.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 4.3e-52 208.4 124 79.8
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 5.6e-52 208.0 124 77.4
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 9.6e-52 207.2 124 80.6
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 9.6e-52 207.2 124 79.8
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.3e-51 206.8 124 77.4
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.3e-51 206.8 124 79.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 2.1e-51 206.1 124 79.0
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.1e-51 206.1 124 78.2
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 2.1e-51 206.1 124 79.8
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 2.8e-51 205.7 124 75.0
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 6.2e-51 204.5 124 77.4
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.1e-50 203.8 124 76.6
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.4e-50 203.4 124 78.2
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.4e-50 203.4 124 78.2
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 1.4e-50 203.4 124 74.2
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 1.4e-50 203.4 124 79.0
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.8e-50 203.0 124 75.0
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.8e-50 203.0 124 79.8
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.8e-50 203.0 124 76.6
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.4e-50 202.6 124 79.8
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 2.4e-50 202.6 124 77.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 2.4e-50 202.6 124 77.4
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 2.4e-50 202.6 124 77.4
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 2.4e-50 202.6 124 77.4
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 2.4e-50 202.6 124 76.6
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 2.4e-50 202.6 124 76.6
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 3.1e-50 202.2 124 79.0
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.0e-50 201.8 124 75.8
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 4.0e-50 201.8 124 79.0
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 5.3e-50 201.4 124 78.2
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 6.9e-50 201.1 124 77.4
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.9e-50 201.1 124 77.4
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 6.9e-50 201.1 124 76.6
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 6.9e-50 201.1 124 79.8
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.2e-49 200.3 124 78.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.2e-49 200.3 124 79.0
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 1.2e-49 200.3 124 79.8
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.5e-49 199.9 124 78.2
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.0e-49 199.5 124 77.4
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.0e-49 199.5 124 79.0
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 3.4e-49 198.7 124 75.8
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 3.4e-49 198.7 124 75.8
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 3.4e-49 198.7 124 75.8
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 4.4e-49 198.4 124 75.0
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 4.4e-49 198.4 124 76.6
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.4e-49 198.4 124 77.4
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 5.8e-49 198.0 124 77.4
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 5.8e-49 198.0 124 77.4
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.8e-49 198.0 124 74.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 7.6e-49 197.6 126 74.6
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 7.6e-49 197.6 124 75.8
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 7.6e-49 197.6 124 75.0
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 7.6e-49 197.6 124 72.6
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 9.9e-49 197.2 124 75.8
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 9.9e-49 197.2 124 76.6
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.3e-48 196.8 124 75.0
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.7e-48 196.4 124 76.6
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.7e-48 196.4 124 75.8
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.7e-48 196.4 124 75.8
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 2.2e-48 196.1 124 78.2
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.2e-48 196.1 124 78.2
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 2.2e-48 196.1 133 69.9
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.9e-48 195.7 124 76.6
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 2.9e-48 195.7 124 72.6
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 3.8e-48 195.3 124 75.8
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.8e-48 195.3 124 78.2
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.9e-48 194.9 124 75.8
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 8.4e-48 194.1 124 75.8
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 1.4e-47 193.4 124 75.0
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.4e-47 193.4 124 74.2
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.9e-47 193.0 124 77.4
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 1.9e-47 193.0 124 75.0
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.4e-47 192.6 124 75.0
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 2.4e-47 192.6 124 75.0
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 3.2e-47 192.2 124 75.0
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 4.2e-47 191.8 124 73.4
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 5.4e-47 191.4 124 73.4
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 7.1e-47 191.0 124 73.4
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.2e-46 190.3 124 73.4
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 1.2e-46 190.3 124 74.2
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.6e-46 189.9 124 71.8
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.6e-46 189.9 124 72.6
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.6e-46 189.9 124 72.6
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 2.7e-46 189.1 124 72.6
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 2.7e-46 189.1 124 75.8
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 4.6e-46 188.3 124 72.6
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 4.6e-46 188.3 117 77.8
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 6.0e-46 188.0 124 71.0
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 6.0e-46 188.0 124 72.6
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 7.8e-46 187.6 124 71.8
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 7.8e-46 187.6 117 76.1
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 7.8e-46 187.6 124 73.4
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 7.8e-46 187.6 117 79.5
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.3e-45 186.8 124 73.4
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.3e-45 186.8 124 70.2
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.7e-45 186.4 124 71.8
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.7e-45 186.4 124 71.0
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.7e-45 186.4 124 71.8
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 3.9e-45 185.3 124 71.0
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 5.1e-45 184.9 124 71.8
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 5.1e-45 184.9 124 71.8
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 5.1e-45 184.9 124 70.2
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 3.3e-44 182.2 124 69.4
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 5.6e-44 181.4 131 65.6
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.3e-43 180.3 124 70.2
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.6e-43 179.9 117 74.4
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 8.1e-43 177.6 124 66.1
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.4e-42 176.8 124 67.7
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 5.3e-42 174.9 124 65.3
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 6.9e-42 174.5 124 67.7
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 9.9e-41 170.6 122 68.9
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.7e-40 169.9 117 70.9
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 2.9e-40 169.1 124 63.7
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 8.4e-40 167.5 137 62.0
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 1.1e-39 167.2 125 64.8
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.4e-39 166.8 122 69.7
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 3.2e-39 165.6 118 67.8
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 3.2e-39 165.6 121 66.1
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.4e-39 164.9 112 70.5
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.2e-38 163.7 119 67.2
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 6.0e-38 161.4 125 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 3.0e-37 159.1 124 62.1
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 5.6e-36 154.8 124 62.9
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 9.0e-34 147.5 130 53.8
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 3.8e-32 142.1 124 54.8
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 4.9e-32 141.7 132 53.0
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.8e-29 133.3 88 70.5
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 3.9e-29 132.1 132 48.5
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 6.2e-27 124.8 109 57.8
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 9.0e-26 120.9 124 52.4
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.0e-25 119.8 129 51.9
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 7.1e-23 111.3 125 47.2
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.2e-22 110.5 136 45.6
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 2.2e-19 99.8 70 64.3
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.4e-18 97.1 71 59.2
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 5.5e-15 85.1 65 61.5
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.0e-13 79.3 60 60.0
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 6.9e-10 68.2 40 70.0


User provided reference genes

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