Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 3026.9 1541 100.0
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 3009.6 1539 99.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2981.4 1556 97.9
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2949.5 1561 96.5
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2947.9 1562 96.6
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2849.7 1560 94.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2724.5 1607 88.1
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2695.2 1582 87.7
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2671.0 1574 87.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2667.1 1570 87.5
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2651.7 1576 86.7
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2649.8 1576 87.2
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2624.7 1623 83.9
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2624.7 1591 85.0
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2620.9 1601 84.3
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2617.4 1627 83.4
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2578.9 1618 83.0
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2556.2 1610 82.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2440.2 1572 81.7
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2439.5 1614 78.3
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2286.5 1585 73.4
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2276.5 1610 73.5
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2276.1 1601 73.8
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2274.6 1604 72.9
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2268.0 1620 71.8
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2265.0 1616 72.3
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2259.2 1605 72.3
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2250.7 1615 72.1
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2230.3 1615 71.0
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2222.6 1617 71.2
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2214.9 1611 70.6
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2210.6 1616 70.6
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2201.8 1624 70.0
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2201.0 1615 70.5
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2199.1 1613 70.4
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2191.4 1617 69.7
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2191.0 1628 69.8
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2191.0 1624 69.8
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2185.6 1610 70.1
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2185.6 1616 70.2
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2175.6 1616 69.4
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2172.9 1619 69.1
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2163.7 1612 68.9
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2159.0 1615 68.9
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2156.3 1619 68.4
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2151.7 1585 70.2
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2147.9 1630 68.4
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2145.5 1640 67.3
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2145.2 1621 68.0
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2130.1 1620 68.6
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2130.1 1608 67.5
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2129.0 1610 68.8
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2127.4 1610 69.0
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2126.3 1575 70.2
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2111.3 1649 66.9
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2110.5 1611 68.4
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2107.0 1594 68.3
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2103.2 1612 68.2
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2100.1 1534 71.0
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2092.0 1624 67.1
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2090.8 1600 67.5
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2087.4 1603 66.9
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2087.0 1608 66.5
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2085.8 1594 66.5
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2079.7 1615 66.9
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2072.4 1439 74.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2069.7 1650 65.0
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2066.6 1618 65.8
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2066.2 1593 67.7
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2064.3 1519 70.3
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2059.3 1618 65.1
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2055.8 1602 65.7
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2055.0 1926 58.7
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2049.6 1601 65.8
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2045.4 1620 65.9
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2027.7 1577 65.9
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2014.2 1612 64.5
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2013.4 1598 65.1
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2006.9 1411 72.4
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1980.3 1517 67.6
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1942.5 1591 63.9
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1931.8 1592 63.7
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1921.0 1517 65.1
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1912.5 1412 71.9
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1880.1 1955 53.5
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1857.0 1599 61.2
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1850.9 1603 60.9
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1848.9 1465 65.5
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1844.7 1197 78.0
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1835.5 1606 61.0
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1830.5 1404 68.7
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1787.7 1544 60.2
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1773.4 1567 59.7
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1639.0 1518 59.0
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1628.6 1099 74.4
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1601.3 1208 68.0
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1452.2 1370 58.2
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1447.6 981 73.6
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1424.5 1400 56.5
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1413.7 977 73.1
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1346.6 1617 46.8
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1287.7 1624 45.1
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1276.9 1203 54.6
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1265.8 1541 45.6
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1178.7 1072 57.6
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1116.7 736 75.8
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 6.5e-304 1048.1 1552 43.7
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 7.5e-268 928.3 522 92.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 9.0e-245 851.7 636 71.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 7.6e-236 822.0 603 69.8
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 2.0e-228 797.3 530 75.5
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 8.2e-222 775.4 664 62.0
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.5e-202 711.4 506 70.6
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 4.5e-196 689.9 561 64.0
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 8.5e-195 685.6 618 59.4
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.6e-171 605.9 590 56.1
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.6e-170 603.2 597 55.6
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.2e-156 558.9 552 54.5
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.3e-150 538.9 332 78.3
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 3.1e-144 517.7 639 48.0
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 7.8e-140 503.1 332 79.8
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 7.8e-140 503.1 367 72.8
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 6.2e-137 493.4 498 56.4
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 9.9e-135 486.1 487 55.6
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.8e-128 465.3 479 54.5
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.4e-125 454.9 290 80.0
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.3e-125 453.0 312 74.7
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 3.7e-121 441.0 414 58.2
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.5e-114 419.1 523 47.2
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 9.6e-114 416.4 318 68.2
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.6e-113 415.6 485 46.8
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.2e-110 405.2 356 58.7
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 7.2e-109 400.2 408 53.4
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.7e-108 398.3 314 66.9
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.2e-95 356.3 244 73.0
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.0e-91 341.7 368 52.2
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.2e-77 295.0 227 63.9
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-68 266.2 219 64.4
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.7e-65 255.0 155 77.4
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 8.3e-65 253.8 152 78.9
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.4e-59 236.5 142 78.9
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 2.3e-51 209.1 142 64.8
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 4.9e-49 201.4 146 71.2
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 9.2e-48 197.2 204 53.9
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.0e-47 196.1 121 80.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 4.7e-44 184.9 129 75.2
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-34 153.7 143 60.8
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.5e-34 153.3 143 60.1
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 5.8e-34 151.4 143 60.1
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.9e-34 150.6 143 60.1
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-32 147.1 93 75.3
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.4e-32 144.8 94 72.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 6.0e-31 141.4 85 77.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.7e-30 139.8 94 68.1
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.6e-30 137.5 137 52.6
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.5e-26 126.7 130 56.9
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.6e-26 125.9 96 64.6
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.4e-26 125.2 130 56.2
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.4e-24 119.4 76 68.4
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.7e-17 96.7 88 56.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 2.9e-17 95.9 88 55.7
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.8e-17 95.5 91 60.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.6e-15 90.1 73 61.6
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.8e-14 86.7 49 73.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.3e-14 86.3 82 54.9
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.4e-13 81.3 56 69.6
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-11 77.4 54 66.7
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 7.6e-10 71.2 55 56.4
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 6.4e-09 68.2 54 63.0
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.9e-08 66.6 44 70.5
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 9.3e-08 64.3 53 58.5


User provided reference genes

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