Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 5.3e-227 790.8 437 100.0
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 2.5e-136 489.6 310 89.7
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 1.3e-135 487.3 310 89.7
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 6.9e-134 481.5 310 88.7
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 2.3e-129 466.5 310 87.1
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 2.5e-128 463.0 311 87.1
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 9.4e-115 417.9 311 80.1
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 3.9e-113 412.5 217 98.2
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 1.8e-97 360.5 310 64.5
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.0e-89 334.7 310 68.7
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 1.4e-78 297.7 319 54.9
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.3e-76 291.2 310 56.5
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 1.7e-76 290.8 322 54.3
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.3e-76 290.4 314 56.1
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.9e-76 289.7 312 54.2
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 5.6e-75 285.8 317 53.0
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 9.5e-75 285.0 310 53.9
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 1.6e-69 267.7 319 51.1
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 4.9e-63 246.1 317 47.6
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 3.2e-62 243.4 310 48.7
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 4.6e-61 239.6 276 52.9
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 2.4e-57 227.3 259 52.5
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 2.1e-53 214.2 208 58.2
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 6.0e-53 212.6 318 43.7
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 1.7e-52 211.1 314 44.3
BolC7t42543H Brassica oleracea HOM05D003615 ORTHO05D004858 6.6e-52 209.1 104 100.0
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.5e-51 208.0 329 40.4
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 7.3e-51 205.7 260 49.2
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 9.6e-51 205.3 318 44.3
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.3e-50 204.9 317 43.8
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.0e-36 158.7 310 37.1
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 8.7e-36 155.6 278 39.9
BolC5t31001H Brassica oleracea HOM05D003615 ORTHO05D016696 2.0e-24 117.9 78 67.9
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 8.4e-23 112.5 244 32.4
BcaC05g26284 Brassica carinata HOM05D003615 ORTHO05D004858 2.5e-22 110.9 117 55.6
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 3.9e-20 103.6 246 31.3
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.9e-19 101.3 248 31.5
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 3.3e-19 100.5 245 32.7
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 3.3e-19 100.5 247 30.4
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 5.7e-19 99.8 244 29.9
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.3e-18 98.6 250 32.0
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 8.2e-18 95.9 245 33.9
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 2.4e-17 94.4 244 29.9
BraA09t39587Z Brassica rapa HOM05D003615 ORTHO05D004858 3.1e-17 94.0 104 55.8
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 5.3e-17 93.2 248 29.8
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 5.3e-17 93.2 250 32.0
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 1.2e-16 92.0 246 30.5
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 2.0e-16 91.3 242 30.6
BcaC05g26283 Brassica carinata HOM05D003615 ORTHO05D004858 2.6e-16 90.9 104 54.8
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 1.0e-15 89.0 231 32.5
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.7e-15 88.2 246 29.3
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 1.7e-15 88.2 245 31.4
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.7e-15 88.2 246 30.9
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 5.0e-15 86.7 232 31.5
BcaC05g26286 Brassica carinata HOM05D003615 ORTHO05D004858 2.5e-14 84.3 143 46.9
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 7.2e-14 82.8 246 31.7
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 2.1e-13 81.3 237 28.7
BolC5t31002H Brassica oleracea HOM05D003615 ORTHO05D004858 3.6e-13 80.5 143 46.2
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 4.6e-13 80.1 109 36.7
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 4.6e-13 80.1 242 29.3
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 1.0e-12 79.0 249 26.5
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 1.4e-12 78.6 246 30.1
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 1.4e-12 78.6 132 34.8
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.4e-12 78.6 246 27.6
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 1.4e-12 78.6 247 30.0
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 2.3e-12 77.8 244 28.7
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 2.3e-12 77.8 244 29.9
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.3e-12 77.8 250 28.8
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.3e-12 77.8 248 30.2
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 3.0e-12 77.4 233 27.0
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 3.9e-12 77.0 242 27.3
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 5.1e-12 76.6 257 28.4
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 5.1e-12 76.6 186 30.1
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 6.7e-12 76.3 250 27.6
BolC5t31003H Brassica oleracea HOM05D003615 ORTHO05D004858 1.1e-11 75.5 140 40.7
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 1.5e-11 75.1 249 26.5
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 2.0e-11 74.7 249 25.3
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.0e-11 74.7 243 29.6
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 4.3e-11 73.6 236 30.1
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 4.3e-11 73.6 120 37.5
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 5.7e-11 73.2 113 33.6
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.4e-11 72.8 253 26.5
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.4e-11 72.8 252 28.2
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 7.4e-11 72.8 251 25.9
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.7e-10 71.6 245 27.8
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 2.2e-10 71.2 249 24.5
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 3.7e-10 70.5 131 32.1
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 3.7e-10 70.5 88 39.8
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 3.7e-10 70.5 251 26.7
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 4.8e-10 70.1 131 31.3
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 4.8e-10 70.1 242 27.7
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 6.3e-10 69.7 195 30.3
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 6.3e-10 69.7 237 33.3
C05p23030 Brassica napus HOM05D003615 ORTHO05D004858 8.2e-10 69.3 102 44.1
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 8.2e-10 69.3 249 26.1
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 1.1e-09 68.9 249 30.9
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.4e-09 68.6 232 27.6
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 1.4e-09 68.6 196 29.1
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.8e-09 68.2 249 26.1
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 1.8e-09 68.2 118 31.4
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 1.8e-09 68.2 244 29.1
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.4e-09 67.8 240 31.7
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.4e-09 67.8 113 32.7
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 2.4e-09 67.8 244 31.6
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 3.1e-09 67.4 246 28.9
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 3.1e-09 67.4 250 28.4
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 3.1e-09 67.4 249 26.1
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 4.1e-09 67.0 251 25.9
BcaC05g26285 Brassica carinata HOM05D003615 ORTHO05D004858 5.3e-09 66.6 121 40.5
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 6.9e-09 66.2 249 29.7
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 6.9e-09 66.2 242 27.7
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 6.9e-09 66.2 250 26.4
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 1.2e-08 65.5 171 31.0
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 1.2e-08 65.5 228 26.8
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.2e-08 65.5 231 28.6
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.5e-08 65.1 117 33.3
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.5e-08 65.1 241 28.6
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.5e-08 65.1 246 24.4
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.4e-08 63.9 245 29.8
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 3.4e-08 63.9 247 27.5
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 4.5e-08 63.5 241 27.0
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 4.5e-08 63.5 228 28.1
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 4.5e-08 63.5 109 31.2
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 4.5e-08 63.5 113 31.9
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.9e-08 63.2 195 28.7
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 1.0e-07 62.4 227 28.6
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.3e-07 62.0 157 27.4
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 1.3e-07 62.0 249 27.3
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 1.7e-07 61.6 242 29.3
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 2.2e-07 61.2 248 27.0
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.9e-07 60.8 195 28.2
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.8e-07 60.5 231 28.1
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 5.0e-07 60.1 246 26.4
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 5.0e-07 60.1 103 35.0
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 5.0e-07 60.1 240 27.1
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.5e-07 59.7 195 28.2
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 6.5e-07 59.7 113 31.0
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 6.5e-07 59.7 168 26.2
FvH4_4g34760 Fragaria vesca HOM05D003615 ORTHO05D015110 8.5e-07 59.3 109 35.8
FAN12G4087 Fragaria x ananassa HOM05D003615 ORTHO05D015110 8.5e-07 59.3 109 35.8
FAN17G2861 Fragaria x ananassa HOM05D003615 ORTHO05D015110 8.5e-07 59.3 109 35.8
FAN07G1344 Fragaria x ananassa HOM05D003615 ORTHO05D015110 1.1e-06 58.9 110 36.4
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 1.4e-06 58.5 243 26.7
FAN22G2348 Fragaria x ananassa HOM05D003615 ORTHO05D015110 5.5e-06 56.6 114 34.2
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 9.4e-06 55.8 240 26.7
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 9.4e-06 55.8 240 26.7


User provided reference genes

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