Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-305 1051.2 521 100.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-305 1051.2 521 100.0
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-281 972.2 521 93.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 9.7e-276 953.0 470 99.6
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-268 929.1 470 96.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 7.7e-265 916.8 472 95.8
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.8e-259 897.5 470 93.6
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.2e-243 845.5 471 90.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.3e-240 836.3 470 87.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 3.8e-240 834.7 470 87.0
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.3e-237 825.5 471 86.4
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.8e-237 823.9 471 86.2
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 3.4e-236 821.6 470 85.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 7.5e-236 820.5 470 85.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-234 814.7 470 85.1
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 8.3e-227 790.4 470 84.0
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 3.5e-225 785.0 469 83.4
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 5.6e-215 751.1 469 78.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.2e-210 735.3 470 78.7
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-208 730.3 443 80.8
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.4e-202 709.1 471 77.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-200 702.6 445 80.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 4.0e-189 665.2 464 69.6
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-187 659.1 390 83.8
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.7e-182 642.1 471 67.9
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-180 637.1 471 67.5
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.5e-180 636.7 468 67.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.4e-180 635.6 467 68.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.2e-179 632.9 468 67.3
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 8.4e-179 630.9 449 74.8
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-178 628.2 468 66.9
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-177 626.3 468 66.7
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.9e-175 619.8 469 64.4
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.6e-174 616.7 469 64.8
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.8e-173 613.2 461 65.5
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 9.0e-173 610.9 461 64.6
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 9.0e-173 610.9 461 64.9
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.0e-172 609.8 469 63.5
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 3.4e-172 609.0 461 64.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.4e-172 609.0 461 64.2
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 5.8e-172 608.2 459 64.9
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.7e-171 606.7 465 64.5
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 4.9e-171 605.1 461 64.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.5e-171 604.7 461 64.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.4e-170 603.6 461 64.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 4.2e-170 602.1 494 62.8
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 5.5e-170 601.7 465 63.4
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.6e-169 600.1 468 63.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-169 599.7 443 66.1
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.5e-169 599.0 461 63.6
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.8e-168 596.7 469 63.3
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 3.0e-168 595.9 460 64.1
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 5.1e-168 595.1 439 66.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.7e-167 591.7 469 62.3
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.7e-167 591.7 461 62.7
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.8e-166 589.3 438 64.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 3.7e-166 589.0 469 62.5
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 4.8e-166 588.6 468 62.2
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 4.8e-166 588.6 490 60.6
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 6.3e-166 588.2 469 61.4
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.1e-165 587.4 460 63.7
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.8e-165 586.6 445 65.4
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 6.9e-165 584.7 468 62.2
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.5e-164 583.6 470 62.6
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.0e-163 580.9 462 61.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.7e-163 580.1 461 61.6
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.7e-163 580.1 469 61.2
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.2e-163 579.7 438 65.8
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 2.9e-163 579.3 475 60.4
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 3.2e-162 575.9 459 60.8
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.5e-162 575.1 462 61.7
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 9.4e-162 574.3 463 60.7
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.2e-161 573.9 465 61.3
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 2.1e-161 573.2 462 61.7
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.7e-161 572.8 470 62.1
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.6e-161 572.4 471 60.7
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 6.1e-161 571.6 469 60.1
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 6.1e-161 571.6 469 60.3
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.0e-160 570.9 461 61.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.0e-160 570.9 459 62.5
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.4e-160 570.5 469 60.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.9e-160 568.9 419 67.8
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 9.7e-159 564.3 469 58.4
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.3e-158 563.9 468 59.4
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.7e-158 563.5 471 59.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 2.2e-158 563.1 462 60.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.8e-158 562.8 461 61.6
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.7e-158 562.4 469 59.3
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 4.8e-158 562.0 459 60.3
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.1e-157 560.8 463 59.8
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 4.1e-157 558.9 463 60.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 5.3e-157 558.5 469 58.8
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.1e-157 557.8 466 60.1
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 5.0e-155 552.0 461 60.5
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 4.2e-154 548.9 455 60.2
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.3e-152 543.1 440 60.7
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.1e-151 540.8 412 63.6
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 5.7e-151 538.5 433 61.7
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 7.4e-151 538.1 462 59.1
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 7.0e-149 531.6 464 56.7
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 8.5e-147 524.6 468 55.8
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 1.1e-146 524.2 470 56.6
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 4.7e-145 518.8 449 58.4
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 8.8e-144 514.6 469 54.6
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.7e-139 500.4 441 58.3
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 9.4e-138 494.6 367 67.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.7e-137 493.0 467 52.7
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.6e-135 486.5 462 53.0
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 3.4e-135 486.1 473 53.9
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.0e-132 476.9 442 52.7
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 5.0e-131 472.2 460 50.4
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 8.5e-131 471.5 491 50.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 8.5e-131 471.5 481 54.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 8.5e-131 471.5 467 51.0
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 7.2e-130 468.4 470 53.6
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.1e-125 454.5 344 64.8
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 5.9e-124 448.7 354 63.0
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 6.6e-123 445.3 425 53.2
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.6e-115 418.7 507 46.2
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.0e-108 397.1 433 49.0
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.1e-104 384.8 500 45.0
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.9e-98 364.0 464 42.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 8.9e-96 355.1 228 81.6
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 9.3e-85 318.5 457 39.6
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 6.9e-80 302.4 430 40.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 9.9e-79 298.5 318 56.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.3e-75 288.1 254 57.1
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.8e-67 261.2 192 66.7
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 3.0e-67 260.4 192 66.7
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.3e-66 256.5 189 65.6
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-64 251.5 250 52.0
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.2e-61 240.4 229 57.2
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-59 234.6 222 56.8
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.8e-57 226.5 198 58.6
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-56 224.2 462 37.7
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 6.7e-51 206.1 149 64.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.5e-42 177.6 146 69.9
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-41 174.9 146 68.5
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-40 171.0 178 53.9
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 7.2e-37 159.5 158 57.6
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.1e-36 157.9 158 55.7
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.1e-34 152.1 156 50.6
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 2.2e-33 147.9 111 64.0
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.8e-33 147.5 214 45.3
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 9.1e-32 142.5 103 71.8
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 9.1e-32 142.5 133 56.4
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-30 139.0 77 80.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-30 137.9 77 80.5
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.5e-30 136.0 116 65.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 9.4e-29 132.5 214 42.5
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 3.6e-28 130.6 76 73.7
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 7.5e-26 122.9 69 79.7
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.5e-23 114.0 56 87.5
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-23 114.0 218 40.8
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 3.5e-23 114.0 86 67.4
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 3.8e-22 110.5 93 62.4
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 8.5e-22 109.4 82 61.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-21 108.6 109 52.3
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 4.0e-19 100.5 103 52.4
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.4e-16 91.3 57 66.7
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 2.7e-15 87.8 51 90.2
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 5.0e-14 83.6 51 88.2
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 6.5e-14 83.2 121 38.0
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 5.5e-13 80.1 188 36.7
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.2e-13 79.7 232 27.6
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.1e-12 78.2 56 58.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.1e-12 78.2 76 50.0
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 5.2e-11 73.6 56 69.6
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.2e-10 72.4 179 29.6
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 9.8e-10 69.3 166 28.9
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 2.8e-09 67.8 40 80.0
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.3e-09 66.2 179 27.9
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-07 60.5 53 56.6
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 4.5e-07 60.5 43 62.8
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 5.9e-07 60.1 53 54.7
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.7e-06 58.5 63 46.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-06 58.5 63 46.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.8e-06 57.4 63 46.0


User provided reference genes

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