Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-95 352.1 176 100.0
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-88 328.9 182 94.5
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 4.8e-70 268.1 191 78.5
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-62 243.4 156 83.3
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 3.0e-56 222.2 174 72.4
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 4.4e-47 191.8 220 54.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.7e-46 189.9 220 53.6
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-46 189.5 242 51.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 8.3e-46 187.6 220 53.2
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-45 186.4 220 52.7
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.8e-41 172.6 220 50.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.7e-41 171.8 220 50.5
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.2e-39 167.2 220 50.9
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-37 160.2 220 48.6
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-37 159.5 140 65.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 5.4e-37 158.3 140 64.3
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-29 133.3 205 46.3
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.4e-29 132.9 216 43.1
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.6e-28 128.6 218 44.0
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.3e-27 126.3 217 44.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.0e-27 125.9 217 43.8
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 8.7e-27 124.4 221 42.5
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.5e-26 123.6 217 42.4
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.9e-26 123.2 217 42.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.3e-26 122.5 217 42.4
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-25 120.2 218 42.2
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 4.7e-25 118.6 218 42.7
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 8.1e-25 117.9 216 41.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.8e-24 116.7 219 39.3
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.8e-24 116.7 216 38.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-24 116.3 218 41.3
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.4e-24 116.3 217 38.7
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 4.0e-24 115.5 218 39.0
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-24 114.8 218 40.8
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 6.9e-24 114.8 218 40.8
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 6.9e-24 114.8 217 41.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 6.9e-24 114.8 217 38.7
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 9.0e-24 114.4 213 41.8
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.0e-23 113.2 216 42.1
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.0e-23 113.2 220 41.4
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 2.6e-23 112.8 216 38.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 3.4e-23 112.5 218 38.5
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.4e-23 112.1 218 40.4
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 7.6e-23 111.3 218 40.4
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 7.6e-23 111.3 217 38.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.3e-22 110.5 217 37.3
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.9e-22 109.4 217 38.2
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.8e-22 109.0 217 39.2
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 4.9e-22 108.6 167 44.9
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 4.9e-22 108.6 135 54.1
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 4.9e-22 108.6 217 38.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.4e-21 107.1 167 44.3
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.4e-21 107.1 218 36.2
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-21 106.7 218 39.9
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-21 105.9 218 39.4
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 3.2e-21 105.9 220 36.4
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 3.2e-21 105.9 217 36.4
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 3.2e-21 105.9 217 37.8
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 3.2e-21 105.9 217 37.8
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 4.2e-21 105.5 217 37.8
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 4.2e-21 105.5 217 37.8
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 4.2e-21 105.5 217 37.3
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.2e-21 105.5 217 37.3
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.2e-21 105.5 217 37.3
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 9.3e-21 104.4 233 35.6
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 9.3e-21 104.4 216 36.1
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.6e-20 103.6 234 36.3
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.6e-20 103.6 218 36.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.1e-20 103.2 217 35.9
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 3.5e-20 102.4 225 35.1
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 6.0e-20 101.7 218 37.2
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 7.8e-20 101.3 217 35.9
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.0e-19 100.9 217 37.3
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.7e-19 100.1 217 37.3
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.7e-19 100.1 217 36.9
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.3e-19 99.8 216 37.0
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.1e-19 98.6 200 37.5
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.1e-19 98.6 215 34.4
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 8.7e-19 97.8 217 36.9
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.1e-18 97.4 217 36.9
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.1e-18 97.4 217 36.4
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.9e-18 96.7 141 44.7
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 4.3e-18 95.5 216 35.6
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 4.3e-18 95.5 218 34.9
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 4.3e-18 95.5 140 43.6
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 9.6e-18 94.4 219 34.2
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 9.6e-18 94.4 135 45.2
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-17 94.0 217 39.6
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.3e-17 94.0 136 44.1
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.3e-17 94.0 140 43.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.6e-17 93.6 217 34.1
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.1e-17 93.2 216 36.1
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 6.2e-17 91.7 140 42.1
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 8.1e-17 91.3 140 42.1
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.1e-16 90.9 134 45.5
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.1e-16 90.9 217 35.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.1e-16 90.9 172 37.2
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.4e-16 90.5 218 33.9
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.4e-16 90.5 143 42.0
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.4e-16 90.5 213 34.7
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.4e-16 89.7 135 44.4
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.1e-16 89.4 133 41.4
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.0e-16 89.0 218 34.4
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.5e-15 87.0 217 33.2
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.5e-15 87.0 134 42.5
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.0e-15 86.7 218 33.0
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.6e-15 86.3 133 40.6
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 3.4e-15 85.9 217 33.2
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 5.8e-15 85.1 173 36.4
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 2.2e-14 83.2 216 31.0
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 3.8e-14 82.4 217 32.3
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 6.4e-14 81.6 161 37.9
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 6.4e-14 81.6 135 39.3
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 1.1e-13 80.9 140 38.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.1e-13 80.9 133 41.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.9e-13 80.1 144 37.5
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.4e-13 79.7 132 41.7
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 7.1e-13 78.2 217 31.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.3e-11 73.9 216 31.5
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 3.0e-11 72.8 133 36.1
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 5.1e-11 72.0 166 31.9
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-09 67.4 149 33.6
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-09 67.0 201 35.3
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.8e-09 66.2 70 50.0
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.2e-09 65.1 123 40.7
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.1e-08 62.8 187 31.6
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-07 60.8 192 33.3
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 4.9e-06 55.5 89 42.7
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 8.4e-06 54.7 131 35.9


User provided reference genes

Program Settings