Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-60 236.1 115 100.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.9e-59 232.3 115 97.4
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-57 225.3 115 94.8
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 2.4e-57 225.3 115 94.8
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 4.4e-56 221.1 111 95.5
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 7.6e-56 220.3 111 95.5
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-55 217.6 111 94.6
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-54 215.7 111 93.7
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.2e-48 196.4 108 85.2
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.5e-48 196.1 111 82.9
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.9e-48 193.4 111 80.2
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-46 189.9 111 77.5
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 5.4e-46 187.6 108 79.6
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 9.3e-46 186.8 111 75.7
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 9.3e-46 186.8 111 78.4
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.7e-45 185.3 111 78.4
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 2.7e-45 185.3 111 74.8
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.6e-45 184.5 108 75.0
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.0e-45 184.1 111 79.3
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-44 183.3 111 74.8
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.9e-44 181.4 111 76.6
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-44 181.4 111 73.9
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.5e-43 179.5 111 74.8
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.5e-43 178.7 111 74.8
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 2.5e-43 178.7 111 74.8
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.5e-43 178.7 110 73.6
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 3.3e-43 178.3 114 71.1
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.3e-43 177.2 111 73.9
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.3e-43 177.2 111 70.3
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.6e-42 174.9 111 74.8
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.1e-41 171.8 106 74.5
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.3e-41 171.0 112 70.5
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-40 169.5 112 69.6
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-40 169.5 112 69.6
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-40 169.1 112 70.5
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-40 169.1 112 70.5
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 3.4e-40 168.3 107 70.1
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 3.4e-40 168.3 107 70.1
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 4.5e-40 167.9 107 70.1
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 4.5e-40 167.9 107 70.1
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-40 167.5 109 71.6
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.6e-40 167.2 110 68.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.9e-39 165.2 107 69.2
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.9e-39 164.5 107 68.2
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-37 159.8 111 67.6
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.8e-36 156.0 108 63.0
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-35 153.3 112 65.2
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-34 149.4 112 63.4
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.4e-33 146.4 111 56.8
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.4e-33 145.6 112 62.5
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-33 145.6 112 62.5
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 4.0e-33 144.8 111 56.8
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 5.3e-33 144.4 111 53.2
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 5.3e-33 144.4 111 54.1
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 6.9e-33 144.1 111 54.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 9.0e-33 143.7 111 55.0
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.5e-32 142.9 111 52.3
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.5e-32 142.9 107 56.1
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.5e-32 142.9 111 53.2
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.0e-32 142.5 110 55.5
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.6e-32 142.1 108 53.7
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.6e-32 142.1 111 52.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.6e-32 142.1 111 53.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.4e-32 141.7 108 56.5
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 4.5e-32 141.4 111 52.3
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.5e-32 141.4 111 53.2
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.8e-32 141.0 111 54.1
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 5.8e-32 141.0 110 52.7
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 5.8e-32 141.0 111 51.4
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 7.6e-32 140.6 111 52.3
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 7.6e-32 140.6 111 53.2
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.0e-31 140.2 111 54.1
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.0e-31 140.2 110 54.5
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.0e-31 140.2 108 56.5
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.0e-31 140.2 111 53.2
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.0e-31 140.2 111 51.4
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.3e-31 139.8 111 51.4
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.3e-31 139.8 111 54.1
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-31 139.8 108 55.6
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-31 139.8 108 55.6
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-31 139.8 108 55.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.3e-31 139.8 111 54.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.7e-31 139.4 111 52.3
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 2.2e-31 139.0 111 55.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 2.2e-31 139.0 111 53.2
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 2.2e-31 139.0 110 51.8
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.2e-31 139.0 110 53.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.9e-31 138.7 111 53.2
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 2.9e-31 138.7 111 52.3
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 3.8e-31 138.3 111 50.5
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.8e-31 138.3 108 53.7
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 3.8e-31 138.3 111 54.1
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 3.8e-31 138.3 111 52.3
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 4.9e-31 137.9 111 50.5
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 4.9e-31 137.9 108 54.6
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.5e-31 137.5 108 53.7
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 6.5e-31 137.5 108 55.6
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 6.5e-31 137.5 111 53.2
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 6.5e-31 137.5 125 48.8
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 8.4e-31 137.1 108 54.6
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 8.4e-31 137.1 108 54.6
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 8.4e-31 137.1 111 51.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 8.4e-31 137.1 111 54.1
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 8.4e-31 137.1 111 54.1
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-30 136.7 108 53.7
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-30 136.7 108 53.7
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-30 136.7 108 53.7
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-30 136.7 108 53.7
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.1e-30 136.7 111 51.4
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.1e-30 136.7 110 50.9
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.1e-30 136.7 111 53.2
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.9e-30 136.0 107 53.3
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.9e-30 136.0 110 50.0
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.9e-30 136.0 110 50.0
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.9e-30 136.0 111 51.4
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.5e-30 135.6 108 50.0
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 2.5e-30 135.6 111 53.2
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 3.2e-30 135.2 111 49.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.2e-30 134.8 111 50.5
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 4.2e-30 134.8 110 51.8
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.2e-30 134.8 107 52.3
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 4.2e-30 134.8 111 51.4
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 7.1e-30 134.0 110 50.0
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 9.3e-30 133.7 107 51.4
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 9.3e-30 133.7 111 50.5
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.2e-29 133.3 111 48.6
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.2e-29 133.3 108 50.9
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.2e-29 133.3 108 54.6
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.6e-29 132.9 111 50.5
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.6e-29 132.9 108 54.6
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 2.7e-29 132.1 108 51.9
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.5e-29 131.7 111 53.2
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.0e-29 131.0 108 52.8
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.0e-29 131.0 108 52.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 6.0e-29 131.0 112 52.7
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 6.0e-29 131.0 108 50.0
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.0e-28 130.2 111 50.5
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.0e-28 130.2 107 50.5
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 2.3e-28 129.0 110 50.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 3.9e-28 128.3 111 50.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 3.3e-27 125.2 108 49.1
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.8e-26 121.3 95 53.7
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.8e-26 121.3 95 53.7
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.5e-24 116.3 111 51.4
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 5.9e-24 114.4 102 50.0
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 5.9e-24 114.4 96 49.0
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.0e-23 113.6 108 50.0
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.7e-23 112.8 107 49.5
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.1e-17 93.6 135 37.0
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.5e-16 88.2 76 59.2
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.9e-14 82.8 115 37.4
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 2.1e-13 79.3 93 40.9
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.4e-12 76.6 57 54.4
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.1e-11 73.6 55 52.7
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.7e-11 71.2 56 53.6
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.8e-10 68.9 54 50.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.8e-10 68.2 55 47.3
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 5.0e-07 58.2 39 64.1
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 5.0e-07 58.2 39 64.1


User provided reference genes

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