Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 9.2e-181 636.7 311 100.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 9.2e-181 636.7 311 100.0
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-178 629.8 311 98.7
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.0e-171 606.7 311 96.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 6.2e-169 597.4 304 94.7
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.4e-165 584.3 311 90.0
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.4e-144 515.8 286 85.0
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.7e-142 509.6 311 76.2
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.7e-139 497.3 311 74.3
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.5e-138 495.7 306 74.8
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.3e-138 495.4 311 76.2
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.6e-138 494.6 306 73.9
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 2.8e-137 492.3 311 74.6
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 6.2e-137 491.1 306 73.9
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 8.1e-137 490.7 306 73.9
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-136 489.6 306 73.9
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 9.0e-136 487.3 311 74.0
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 4.5e-135 485.0 309 74.1
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.3e-134 483.4 306 73.5
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 8.4e-134 480.7 313 72.8
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.4e-134 480.7 311 74.0
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.2e-133 478.8 311 73.3
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.2e-133 478.4 309 72.2
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 5.1e-131 471.5 299 74.2
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 8.7e-131 470.7 311 70.4
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.5e-130 469.2 311 70.1
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.0e-128 461.8 306 70.3
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.2e-127 460.3 311 69.1
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.8e-127 458.0 311 78.1
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.0e-126 457.2 304 71.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.8e-126 455.3 306 69.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-125 452.2 298 70.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.9e-124 447.6 311 68.5
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.9e-122 443.0 308 68.8
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.1e-121 439.5 307 68.1
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 3.7e-121 438.7 307 67.8
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 4.9e-118 428.3 305 66.9
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.9e-117 426.4 300 65.7
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-116 422.9 311 66.9
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 7.9e-116 421.0 305 65.6
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 3.1e-112 409.1 307 64.8
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-110 403.7 291 66.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 7.2e-109 397.9 305 63.3
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-108 396.7 284 65.8
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 4.5e-95 352.1 205 78.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 4.5e-95 352.1 205 78.5
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-94 350.5 352 52.0
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 6.7e-91 338.2 302 54.3
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.3e-90 335.9 309 53.7
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 3.3e-90 335.9 300 54.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 9.7e-90 334.3 304 53.3
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 9.7e-90 334.3 297 52.9
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 9.7e-90 334.3 295 53.6
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.2e-89 333.2 299 54.5
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.8e-89 332.8 292 53.8
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 4.8e-89 332.0 300 53.0
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.1e-88 330.9 296 54.1
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.4e-88 330.5 297 53.5
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.4e-88 330.5 309 53.1
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.8e-88 330.1 299 53.8
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.8e-88 330.1 292 54.1
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 4.1e-88 328.9 292 53.8
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.2e-87 327.4 297 53.9
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.6e-87 327.0 302 53.0
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.6e-87 327.0 297 53.2
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.0e-87 326.6 292 53.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.0e-87 326.6 297 53.5
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 3.5e-87 325.9 292 52.7
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 3.5e-87 325.9 292 53.1
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 3.5e-87 325.9 299 52.5
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 4.5e-87 325.5 292 53.4
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 4.5e-87 325.5 297 53.5
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.9e-87 325.1 301 52.2
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.0e-86 324.3 297 51.9
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.3e-86 323.9 278 54.3
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.3e-86 323.9 305 52.8
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.7e-86 323.6 297 53.2
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.9e-86 322.8 306 51.6
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.8e-86 322.4 299 52.5
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 5.0e-86 322.0 297 51.9
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 5.0e-86 322.0 292 53.1
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 6.5e-86 321.6 297 52.2
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 8.5e-86 321.2 292 52.4
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 8.5e-86 321.2 297 52.2
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.1e-85 320.9 297 52.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.5e-85 320.5 292 52.7
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.5e-85 319.7 293 52.6
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.5e-85 319.7 305 50.2
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 2.5e-85 319.7 297 52.5
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 2.5e-85 319.7 300 51.0
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 3.2e-85 319.3 297 51.9
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 3.2e-85 319.3 302 52.3
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 4.2e-85 318.9 311 51.1
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 4.2e-85 318.9 304 52.3
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 5.5e-85 318.5 292 52.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 7.2e-85 318.2 302 52.3
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 9.4e-85 317.8 299 51.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.2e-84 317.4 292 51.7
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.2e-84 317.4 297 51.9
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.6e-84 317.0 299 51.8
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.1e-84 316.6 291 52.9
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.6e-84 315.8 306 51.3
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 4.7e-84 315.5 295 52.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 6.1e-84 315.1 292 51.7
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.1e-84 315.1 220 66.8
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.1e-84 315.1 291 52.2
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.0e-84 314.7 306 50.3
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 8.0e-84 314.7 292 51.4
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.4e-83 313.9 297 50.8
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.8e-83 313.5 301 52.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 4.0e-83 312.4 300 53.0
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 6.8e-83 311.6 300 50.7
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 8.8e-83 311.2 292 51.0
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.8e-83 311.2 291 51.5
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.2e-82 310.8 302 51.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.2e-82 310.8 276 54.0
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.2e-82 310.8 308 50.6
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-82 310.5 299 51.2
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-82 310.1 288 52.1
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 5.7e-82 308.5 291 51.9
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 5.7e-82 308.5 291 51.9
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.7e-82 308.5 292 51.0
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 4.8e-81 305.4 294 51.0
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.1e-80 304.3 303 50.8
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 4.1e-80 302.4 292 50.3
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 4.1e-80 302.4 300 49.3
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 7.0e-80 301.6 299 50.8
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 7.0e-80 301.6 291 51.2
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.6e-79 300.4 299 50.8
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.6e-79 300.4 294 50.0
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 4.5e-79 298.9 288 49.0
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.0e-78 297.7 306 49.3
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.2e-78 296.6 288 47.9
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 6.5e-78 295.0 290 49.0
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.5e-78 294.7 311 54.3
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 9.4e-77 291.2 365 43.0
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 8.0e-76 288.1 292 48.6
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-75 287.3 273 50.9
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 8.3e-73 278.1 283 48.1
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 8.3e-73 278.1 283 48.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.8e-72 276.9 287 47.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.2e-71 274.2 297 46.5
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 2.5e-69 266.5 287 47.0
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 7.2e-69 265.0 243 51.4
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.2e-68 264.2 289 46.4
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.4e-67 260.8 276 46.4
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.3e-65 254.2 297 44.4
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 4.3e-61 239.2 225 51.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-60 236.1 150 72.0
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 4.7e-60 235.7 162 72.8
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.0e-59 234.6 228 49.6
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.0e-59 232.6 218 50.0
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.7e-57 227.3 225 49.8
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 8.9e-51 204.9 135 71.1
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 5.4e-48 195.7 135 68.1
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 5.4e-48 195.7 135 68.1
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 8.9e-43 178.3 173 50.9
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-39 167.9 107 70.1
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.2e-36 157.9 209 40.2
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.1e-36 157.1 327 32.1
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.2e-34 151.4 293 32.1
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 3.0e-30 136.7 180 41.7
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 8.7e-30 135.2 192 41.1
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.0e-18 97.4 74 60.8
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 7.4e-13 79.0 72 48.6
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-08 65.1 74 43.2


User provided reference genes

Program Settings