Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p18980 Brassica napus HOM05D001046 ORTHO05D042866 1.8e-27 125.2 62 100.0
BolC7t42408H Brassica oleracea HOM05D001046 ORTHO05D042866 1.8e-27 125.2 62 100.0
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 3.2e-16 87.8 45 91.1
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 4.1e-16 87.4 45 91.1
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 9.2e-16 86.3 45 88.9
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 9.2e-16 86.3 45 88.9
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 2.7e-15 84.7 45 91.1
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 4.6e-15 84.0 45 86.7
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 4.6e-15 84.0 45 86.7
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 2.3e-14 81.6 45 86.7
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 2.5e-13 78.2 45 82.2
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 2.5e-13 78.2 45 82.2
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 5.6e-13 77.0 45 84.4
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 2.1e-12 75.1 45 80.0
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 1.2e-10 69.3 45 71.1
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 1.2e-10 69.3 45 71.1
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 1.2e-10 69.3 45 66.7
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 2.0e-10 68.6 45 68.9
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 3.4e-10 67.8 45 66.7
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 5.8e-10 67.0 45 68.9
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 1.7e-09 65.5 45 66.7
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 6.4e-09 63.5 57 54.4
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 8.3e-09 63.2 59 50.8
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 8.3e-09 63.2 57 54.4
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 1.1e-08 62.8 45 66.7
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 1.1e-08 62.8 43 62.8
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 1.9e-08 62.0 44 63.6
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 2.4e-08 61.6 45 60.0
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 2.4e-08 61.6 43 62.8
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 3.2e-08 61.2 45 62.2
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 4.1e-08 60.8 45 62.2
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 5.4e-08 60.5 57 52.6
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 7.1e-08 60.1 57 50.9
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 7.1e-08 60.1 57 50.9
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 9.2e-08 59.7 57 50.9
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 9.2e-08 59.7 55 52.7
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 9.2e-08 59.7 45 57.8
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 9.2e-08 59.7 59 50.8
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 1.2e-07 59.3 45 60.0
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 1.2e-07 59.3 45 60.0
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 1.2e-07 59.3 42 57.1
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 1.2e-07 59.3 45 57.8
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 1.6e-07 58.9 45 60.0
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 1.6e-07 58.9 57 50.9
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 1.6e-07 58.9 57 49.1
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 1.6e-07 58.9 45 55.6
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 2.7e-07 58.2 43 58.1
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 3.5e-07 57.8 45 55.6
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 3.5e-07 57.8 57 49.1
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 6.0e-07 57.0 57 45.6
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 7.8e-07 56.6 56 50.0
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 7.8e-07 56.6 56 50.0
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 1.0e-06 56.2 45 57.8
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 1.7e-06 55.5 43 62.8
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 1.7e-06 55.5 45 53.3
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.7e-06 55.5 58 50.0
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 2.3e-06 55.1 41 58.5
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 3.0e-06 54.7 44 54.5
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 5.1e-06 53.9 51 49.0
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 6.6e-06 53.5 41 61.0
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 6.6e-06 53.5 41 61.0
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 6.6e-06 53.5 45 53.3
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 8.6e-06 53.1 55 47.3
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 8.6e-06 53.1 55 47.3
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 8.6e-06 53.1 45 53.3


User provided reference genes

Program Settings