Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.2e-183 645.6 348 100.0
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 3.4e-152 542.0 293 100.0
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-151 540.4 293 99.7
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 5.7e-131 471.5 295 86.1
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.2e-130 469.5 294 86.1
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-122 442.6 294 82.3
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.9e-106 389.4 299 75.3
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 6.4e-98 361.7 295 69.2
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.8e-92 343.6 296 69.6
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 7.3e-86 321.6 296 67.6
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.0e-79 299.7 304 62.5
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.1e-73 278.5 304 55.6
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.9e-70 270.4 305 57.4
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 3.3e-70 269.6 295 57.6
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.8e-69 266.5 306 55.6
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 9.0e-68 261.5 297 52.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 5.8e-67 258.8 305 56.4
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 5.8e-67 258.8 305 56.4
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.9e-66 255.8 305 55.7
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.9e-66 255.8 305 55.7
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 5.4e-65 252.3 305 55.4
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.6e-64 250.8 311 52.7
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.1e-64 250.4 302 54.6
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.1e-62 244.6 301 55.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.9e-62 243.8 304 53.9
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.5e-62 243.4 304 53.6
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 3.3e-62 243.0 304 53.6
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 5.6e-62 242.3 304 53.6
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.6e-61 240.7 300 53.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.6e-59 233.4 302 52.0
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.2e-58 230.3 302 51.7
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 9.6e-54 214.9 291 52.6
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.2e-37 160.6 314 39.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.2e-37 160.6 316 43.0
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 4.1e-36 156.4 326 41.7
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 9.0e-36 155.2 327 39.1
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.2e-35 154.8 325 42.8
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.0e-35 154.1 315 40.0
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 3.8e-34 149.8 315 36.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.5e-34 149.1 315 36.8
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.5e-33 147.1 315 39.0
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 5.5e-33 146.0 326 40.2
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 7.2e-33 145.6 328 38.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 7.9e-32 142.1 314 39.2
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 3.0e-31 140.2 340 33.5
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 7.4e-30 135.6 323 38.7
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 9.7e-30 135.2 315 34.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.7e-29 133.3 308 36.4
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.5e-27 127.9 296 36.5
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 7.7e-27 125.6 304 36.5
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.3e-26 124.8 305 32.5
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 6.5e-26 122.5 303 35.3
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 8.5e-26 122.1 324 36.1
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.5e-25 120.6 321 30.8
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 9.4e-25 118.6 304 31.2
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.2e-24 118.2 317 30.9
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.7e-24 117.1 301 32.6
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 6.1e-24 115.9 321 30.5
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.4e-23 114.8 308 34.7
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.8e-23 114.4 299 34.8
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.1e-22 111.7 317 31.9
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.1e-22 111.7 307 31.3
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.5e-22 111.3 304 35.2
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 4.4e-22 109.8 301 35.9
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 9.7e-22 108.6 335 34.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.7e-21 107.8 313 35.5
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.7e-21 107.8 296 30.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 2.2e-21 107.5 304 33.9
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.7e-21 106.7 287 31.4
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 3.7e-21 106.7 287 31.4
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 4.8e-21 106.3 316 33.9
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 4.8e-21 106.3 295 32.2
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 6.3e-21 105.9 292 36.0
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 8.2e-21 105.5 149 45.0
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.1e-20 105.1 270 34.1
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 1.4e-20 104.8 310 38.4
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.1e-20 103.6 313 34.8
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.1e-20 103.2 288 36.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.0e-20 102.4 288 36.1
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.0e-20 102.4 325 29.8
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.1e-20 102.1 324 30.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.0e-19 100.9 318 34.6
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 3.5e-19 100.1 317 34.4
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 4.5e-19 99.8 299 35.8
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 5.9e-19 99.4 319 34.2
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 5.9e-19 99.4 310 38.1
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.0e-18 98.6 309 34.6
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.0e-18 98.6 316 33.9
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.0e-18 98.6 322 36.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.0e-18 98.6 316 32.0
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.0e-18 98.6 301 35.5
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.3e-18 98.2 311 31.5
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.3e-18 98.2 317 33.1
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.3e-18 98.2 311 30.5
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.7e-18 97.8 293 34.1
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.9e-18 97.1 320 33.4
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 5.0e-18 96.3 326 30.1
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.1e-17 95.1 263 33.1
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.5e-17 94.0 304 34.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.5e-17 94.0 308 32.1
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 3.2e-17 93.6 308 32.8
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 4.2e-17 93.2 186 35.5
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.5e-17 92.8 310 29.0
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 7.2e-17 92.4 315 30.8
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.6e-16 91.3 302 33.4
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.6e-16 91.3 309 28.2
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.1e-16 90.9 319 31.7
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 2.1e-16 90.9 314 33.4
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.7e-16 90.5 310 28.4
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 3.6e-16 90.1 308 27.6
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.6e-16 90.1 280 30.4
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.2e-14 85.1 286 33.2
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.2e-14 85.1 289 26.6
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-14 84.7 280 30.4
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.3e-13 81.6 158 34.8
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.7e-13 81.3 311 33.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 3.7e-13 80.1 310 31.0
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 1.1e-12 78.6 164 34.8
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.4e-12 78.2 317 26.5
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.8e-12 77.8 305 24.9
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.4e-12 77.4 315 32.1
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.1e-12 77.0 310 28.7
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 4.1e-12 76.6 306 32.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 4.1e-12 76.6 173 32.4
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 5.3e-12 76.3 126 36.5
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.2e-11 75.1 302 27.5
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.5e-11 73.6 310 27.4
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 4.5e-11 73.2 149 34.2
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.7e-10 71.2 186 31.7
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 3.8e-10 70.1 242 31.4
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.8e-10 70.1 240 34.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 5.0e-10 69.7 283 26.1
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.1e-09 68.6 322 25.2
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.5e-09 67.4 282 28.4
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 3.2e-09 67.0 156 30.8
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 5.5e-09 66.2 245 35.5
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 9.4e-09 65.5 139 30.9
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.6e-08 64.7 277 25.6
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 6.1e-08 62.8 281 27.4
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.0e-07 62.0 126 32.5


User provided reference genes

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