Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p18050 Brassica napus HOM05D003206 ORTHO05D016781 2.5e-104 382.1 190 100.0
BolC3t19546H Brassica oleracea HOM05D003206 ORTHO05D016781 3.0e-94 348.6 234 78.6
BolC2t11510H Brassica oleracea HOM05D003206 ORTHO05D016781 4.9e-92 341.3 234 76.9
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 5.2e-78 294.7 221 74.7
A03p18490 Brassica napus HOM05D003206 ORTHO05D016781 3.2e-67 258.8 204 70.6
BcaC07g39914 Brassica carinata HOM05D003206 ORTHO05D005207 1.3e-65 253.4 297 52.5
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 2.7e-58 229.2 332 45.5
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 4.6e-58 228.4 332 45.5
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 1.7e-57 226.5 332 44.9
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 1.7e-57 226.5 332 44.9
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 1.7e-57 226.5 332 44.9
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 3.9e-57 225.3 332 44.6
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 3.9e-57 225.3 332 44.6
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 6.6e-57 224.6 332 44.3
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 1.9e-56 223.0 332 44.3
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 1.9e-56 223.0 332 44.0
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 1.9e-56 223.0 332 44.0
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 1.9e-56 223.0 332 44.0
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 2.5e-56 222.6 331 44.1
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 2.5e-56 222.6 332 44.3
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 3.3e-56 222.2 332 44.0
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 5.6e-56 221.5 332 44.3
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 5.6e-56 221.5 332 44.0
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 5.6e-56 221.5 332 43.7
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 9.6e-56 220.7 332 44.0
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 1.3e-55 220.3 332 43.7
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 9.0e-54 214.2 332 42.5
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 1.2e-53 213.8 332 42.8
BcaC03g17488 Brassica carinata HOM05D003206 ORTHO05D016781 4.9e-52 208.4 108 95.4
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 1.4e-51 206.8 331 41.1
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 4.2e-51 205.3 332 41.0
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.3e-49 200.3 309 41.7
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 1.3e-49 200.3 332 39.5
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 1.3e-49 200.3 336 39.3
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 1.3e-49 200.3 339 38.9
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 3.9e-49 198.7 319 40.4
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 6.6e-49 198.0 347 37.5
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 8.7e-49 197.6 350 37.7
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 1.1e-48 197.2 318 40.6
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 1.9e-48 196.4 339 37.5
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.9e-48 196.4 332 38.6
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.9e-48 196.4 339 38.9
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 1.9e-48 196.4 332 38.6
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 1.9e-48 196.4 319 40.4
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 2.5e-48 196.1 319 39.8
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 3.3e-48 195.7 328 39.0
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 4.3e-48 195.3 319 39.8
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 7.3e-48 194.5 319 39.8
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 7.3e-48 194.5 319 40.4
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 9.6e-48 194.1 332 39.2
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.3e-47 193.7 337 38.3
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 1.3e-47 193.7 319 40.1
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 2.1e-47 193.0 332 38.3
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 2.1e-47 193.0 332 38.3
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 2.1e-47 193.0 315 40.6
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 2.1e-47 193.0 337 38.3
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 2.8e-47 192.6 337 38.0
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 2.8e-47 192.6 316 40.5
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 3.6e-47 192.2 333 39.3
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 3.6e-47 192.2 319 39.5
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 6.2e-47 191.4 319 39.5
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 8.1e-47 191.0 332 38.0
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 8.1e-47 191.0 350 36.0
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 8.1e-47 191.0 332 38.0
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 1.1e-46 190.7 337 38.0
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.1e-46 190.7 337 38.0
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.1e-46 190.7 337 38.0
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.1e-46 190.7 337 38.0
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 1.1e-46 190.7 316 39.9
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 1.4e-46 190.3 332 38.0
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 1.4e-46 190.3 318 39.0
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 2.4e-46 189.5 332 38.9
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 2.4e-46 189.5 314 39.8
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.1e-46 189.1 337 37.7
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 3.1e-46 189.1 337 37.4
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 4.0e-46 188.7 337 37.7
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 4.0e-46 188.7 319 39.8
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 4.0e-46 188.7 350 36.3
BcaC06g35262 Brassica carinata HOM05D003206 ORTHO05D016781 5.3e-46 188.3 94 98.9
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 5.3e-46 188.3 349 35.8
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 5.3e-46 188.3 345 36.5
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 6.9e-46 188.0 337 37.1
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 6.9e-46 188.0 345 36.5
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 9.0e-46 187.6 316 39.2
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 1.2e-45 187.2 337 37.1
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 1.2e-45 187.2 314 39.5
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 1.5e-45 186.8 311 41.2
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 1.5e-45 186.8 332 38.3
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 1.5e-45 186.8 331 37.8
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 2.6e-45 186.0 314 39.5
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 2.6e-45 186.0 341 38.1
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 2.6e-45 186.0 319 38.6
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 3.4e-45 185.7 318 38.1
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 5.8e-45 184.9 319 38.6
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 5.8e-45 184.9 341 37.8
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 7.6e-45 184.5 319 38.6
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 7.6e-45 184.5 336 36.3
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 7.6e-45 184.5 350 35.7
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 9.9e-45 184.1 345 36.5
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 1.7e-44 183.3 346 35.5
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 2.2e-44 183.0 342 37.1
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 2.2e-44 183.0 319 38.2
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 2.2e-44 183.0 350 35.4
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 2.9e-44 182.6 349 35.0
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.9e-44 182.6 319 38.2
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 2.9e-44 182.6 345 36.2
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 2.9e-44 182.6 341 37.8
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.8e-44 182.2 339 36.3
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 3.8e-44 182.2 336 36.9
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 8.4e-44 181.0 332 35.5
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 1.1e-43 180.6 362 34.8
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 1.1e-43 180.6 319 37.6
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 1.4e-43 180.3 332 36.4
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 7.1e-43 177.9 371 34.5
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 1.6e-42 176.8 370 34.6
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 2.1e-42 176.4 328 35.7
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 2.1e-42 176.4 328 36.9
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 2.7e-42 176.0 332 35.5
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 3.5e-42 175.6 317 38.2
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 4.6e-42 175.3 344 34.9
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 6.0e-42 174.9 328 36.9
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 7.9e-42 174.5 339 34.8
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 7.9e-42 174.5 336 35.1
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 1.8e-41 173.3 341 35.5
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 3.9e-41 172.2 340 35.6
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 1.1e-40 170.6 328 35.7
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 2.5e-40 169.5 295 39.7
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 3.3e-40 169.1 312 36.9
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 3.3e-40 169.1 293 37.2
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 4.3e-40 168.7 312 36.9
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 4.3e-40 168.7 319 36.4
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 4.3e-40 168.7 274 38.7
Cfa003309 Carpinus fangiana HOM05D003206 ORTHO05D005207 5.6e-40 168.3 252 41.7
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 7.4e-40 167.9 334 35.3
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 1.3e-39 167.2 351 35.0
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 6.2e-39 164.9 319 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 3.1e-38 162.5 313 34.5
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 3.1e-38 162.5 339 34.5
BcaC03g17489 Brassica carinata HOM05D003206 ORTHO05D024104 1.2e-37 160.6 82 95.1
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 1.2e-37 160.6 328 34.8
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 1.5e-37 160.2 329 33.4
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.5e-37 160.2 339 33.6
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 1.0e-36 157.5 341 32.0
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 2.2e-36 156.4 295 36.3
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.9e-36 155.2 289 37.4
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 6.5e-36 154.8 297 36.7
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 1.9e-35 153.3 318 34.3
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 3.2e-35 152.5 327 33.6
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.6e-34 150.2 266 39.1
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 1.9e-32 143.3 91 73.6
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 1.9e-32 143.3 316 31.3
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.5e-32 142.9 293 34.1
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 1.6e-31 140.2 98 76.5
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.2e-29 134.0 298 34.6
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 1.7e-28 130.2 98 69.4
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 2.9e-28 129.4 110 63.6
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 3.8e-28 129.0 98 68.4
FAN09G0009 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.5e-28 128.3 89 67.4
Aqoxy133s001 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 1.4e-27 127.1 105 65.7
unitig_27.g24952 Utricularia gibba HOM05D003206 ORTHO05D002964 5.5e-27 125.2 85 75.3
A09p11990 Brassica napus HOM05D003206 ORTHO05D016781 1.8e-25 120.2 61 96.7
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.2e-23 113.2 84 69.0
PSO063G0253 Papaver somniferum HOM05D003206 ORTHO05D016781 2.2e-23 113.2 102 61.8
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 4.8e-23 112.1 98 59.2
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 1.5e-21 107.1 314 27.4
arahy.Tifrunner.gnm1.ann1.GS37TA Arachis hypogaea HOM05D003206 ORTHO05D005207 4.5e-21 105.5 79 67.1
Ciclev10027554m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.2e-20 103.2 260 31.5
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 2.2e-20 103.2 311 26.7
Aqoxy133s002 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 5.0e-20 102.1 63 76.2
CSS0045117 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 1.9e-19 100.1 232 32.3
Manes.11G080700 Manihot esculenta HOM05D003206 ORTHO05D014283 1.6e-18 97.1 72 68.1
Glyma.08G214200 Glycine max HOM05D003206 ORTHO05D014283 3.6e-18 95.9 96 52.1
CSS0035908 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D014283 4.6e-18 95.5 183 36.6
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 4.6e-18 95.5 84 51.2
A09p11980 Brassica napus HOM05D003206 ORTHO05D016781 1.4e-17 94.0 114 50.9
GSVIVG01017394001 Vitis vinifera HOM05D003206 ORTHO05D014283 3.3e-16 89.4 50 86.0
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 3.7e-15 85.9 115 42.6
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 3.7e-15 85.9 115 42.6
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 3.7e-15 85.9 308 23.7
Cfa021276 Carpinus fangiana HOM05D003206 ORTHO05D014283 1.4e-14 84.0 91 52.7
RcHm_v2.0_Chr2g0134741 Rosa chinensis HOM05D003206 ORTHO05D034830 1.8e-14 83.6 61 68.9
Haze_26576 Corylus avellana HOM05D003206 ORTHO05D164003 5.3e-14 82.0 79 48.1
Cfa027331 Carpinus fangiana HOM05D003206 ORTHO05D122679 1.4e-11 73.9 98 43.9
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 2.5e-11 73.2 81 39.5
GSVIVG01015945001 Vitis vinifera HOM05D003206 ORTHO05D014283 1.6e-10 70.5 50 76.0
GSVIVG01015682001 Vitis vinifera HOM05D000086 ORTHO05D000431 4.7e-10 68.9 62 56.5
unitig_27.g24951 Utricularia gibba HOM05D003206 ORTHO05D017170 1.8e-09 67.0 37 73.0
HPP92_009999 Vanilla planifolia HOM05D003206 ORTHO05D429609 1.1e-08 64.3 142 35.9
Haze_16585 Corylus avellana HOM05D003206 ORTHO05D005207 2.8e-07 59.7 73 49.3


User provided reference genes

Program Settings