Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p17820 Brassica napus HOM05D003040 ORTHO05D003443 1.9e-81 305.8 157 100.0
BolC7t42288H Brassica oleracea HOM05D003040 ORTHO05D003443 1.9e-81 305.8 157 100.0
BraA07t28972Z Brassica rapa HOM05D003040 ORTHO05D003443 2.1e-64 249.2 157 85.4
A07p11880 Brassica napus HOM05D003040 ORTHO05D003443 2.7e-64 248.8 158 86.1
Sp1g23600 Schrenkiella parvula HOM05D003040 ORTHO05D003443 6.1e-48 194.5 159 72.3
BcaB03g13990 Brassica carinata HOM05D003040 ORTHO05D003443 1.8e-47 193.0 157 72.0
CARHR026960 Cardamine hirsuta HOM05D003040 ORTHO05D003443 1.1e-46 190.3 160 67.5
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.3e-45 186.8 158 70.3
BcaC01g06956 Brassica carinata HOM05D003040 ORTHO05D003443 4.8e-45 184.9 162 68.5
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 8.2e-45 184.1 158 67.1
AL1G40780 Arabidopsis lyrata HOM05D003040 ORTHO05D003443 2.6e-43 179.1 187 58.8
BcaC01g01617 Brassica carinata HOM05D003040 ORTHO05D003443 6.5e-42 174.5 160 65.6
BolC3t19663H Brassica oleracea HOM05D003040 ORTHO05D003443 6.5e-42 174.5 160 65.6
C03p73720 Brassica napus HOM05D003040 ORTHO05D003443 2.5e-41 172.6 160 65.0
BraA09t39362Z Brassica rapa HOM05D003040 ORTHO05D003443 1.6e-40 169.9 184 59.2
BcaC06g35282 Brassica carinata HOM05D003040 ORTHO05D003443 3.9e-39 165.2 86 97.7
Carub.0001s2591 Capsella rubella HOM05D003040 ORTHO05D003443 1.1e-38 163.7 188 56.4
A08p26350 Brassica napus HOM05D003040 ORTHO05D003443 4.5e-35 151.8 184 54.3
BraA08t34586Z Brassica rapa HOM05D003040 ORTHO05D003443 4.5e-35 151.8 184 54.3
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.7e-34 149.8 172 58.1
Thhalv10009145m.g Eutrema salsugineum HOM05D003040 ORTHO05D003443 3.6e-32 142.1 122 70.5
BolC5t31327H Brassica oleracea HOM05D003040 ORTHO05D003443 1.8e-28 129.8 117 65.8
A09p38560 Brassica napus HOM05D003040 ORTHO05D003443 2.9e-26 122.5 157 50.3
C05p26080 Brassica napus HOM05D003040 ORTHO05D003443 4.2e-25 118.6 157 48.4
BcaC06g35281 Brassica carinata HOM05D003040 ORTHO05D003443 1.2e-24 117.1 57 100.0
AT1G27380 Arabidopsis thaliana HOM05D003040 ORTHO05D003443 1.8e-23 113.2 96 67.7
THA.LOC104825502 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 9.8e-22 107.5 185 42.2
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 2.3e-18 96.3 140 43.6
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 2.8e-16 89.4 144 43.1
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 1.0e-15 87.4 145 37.2
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.4e-15 87.0 142 39.4
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 5.2e-15 85.1 140 39.3
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 8.9e-15 84.3 143 40.6
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 1.2e-14 84.0 145 40.7
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 2.0e-14 83.2 160 38.1
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 4.4e-14 82.0 148 38.5
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 4.4e-14 82.0 139 41.7
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 7.5e-14 81.3 148 37.8
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 1.3e-13 80.5 145 40.7
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.7e-13 80.1 162 35.2
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 1.7e-13 80.1 141 38.3
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 2.8e-13 79.3 157 35.0
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 3.7e-13 79.0 162 38.9
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 3.7e-13 79.0 145 40.7
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 3.7e-13 79.0 156 37.8
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 3.7e-13 79.0 152 36.8
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 4.9e-13 78.6 139 36.7
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 4.1e-12 75.5 137 37.2
MD04G1027900 Malus domestica HOM05D003040 ORTHO05D003443 4.1e-12 75.5 159 35.8
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 5.4e-12 75.1 137 37.2
Eucgr.H00463 Eucalyptus grandis HOM05D003040 ORTHO05D003443 5.4e-12 75.1 154 36.4
Peaxi162Scf00048g00136 Petunia axillaris HOM05D003040 ORTHO05D003443 7.0e-12 74.7 145 33.8
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 1.6e-11 73.6 152 40.1
AUR62000315 Chenopodium quinoa HOM05D000001 ORTHO05D010091 2.7e-11 72.8 141 36.2
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 2.7e-11 72.8 137 39.4
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 2.7e-11 72.8 138 37.0
Duzib106G1609 Durio zibethinus HOM05D003040 ORTHO05D003443 3.5e-11 72.4 133 37.6
Nitab4.5_0002233g0050 Nicotiana tabacum HOM05D003040 ORTHO05D003443 3.5e-11 72.4 138 34.1
PGR031G3166 Punica granatum HOM05D003040 ORTHO05D003443 3.5e-11 72.4 147 36.7
THA.LOC104820915 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 3.5e-11 72.4 142 39.4
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 4.5e-11 72.0 159 34.0
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 5.9e-11 71.6 153 36.6
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 5.9e-11 71.6 136 35.3
THA.LOC104807545 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 5.9e-11 71.6 84 48.8
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 7.8e-11 71.2 148 36.5
PSO357G0622 Papaver somniferum HOM05D003040 ORTHO05D003443 1.0e-10 70.9 133 37.6
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 1.0e-10 70.9 151 32.5
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 1.0e-10 70.9 141 36.2
Actinidia32963 Actinidia chinensis HOM05D003040 ORTHO05D003443 1.3e-10 70.5 140 36.4
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 1.3e-10 70.5 139 36.7
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 1.7e-10 70.1 151 36.4
Sopen12g033470 Solanum pennellii HOM05D003040 ORTHO05D003443 1.7e-10 70.1 136 38.2
MSTRG.8213 Avicennia marina HOM05D003040 ORTHO05D003443 2.3e-10 69.7 137 32.1
SalBow1G6107 Salvia bowleyana HOM05D000001 ORTHO05D010091 2.3e-10 69.7 130 34.6
SGA_v2.0_scaffold122G33178 Striga asiatica HOM05D003040 ORTHO05D003443 2.3e-10 69.7 168 32.1
MD04G1244300 Malus domestica HOM05D003040 ORTHO05D003443 3.8e-10 68.9 168 32.7
PGSC0003DMG400016167 Solanum tuberosum HOM05D003040 ORTHO05D003443 3.8e-10 68.9 136 33.1
EL10Ac4g09973 Beta vulgaris HOM05D003040 ORTHO05D003443 6.6e-10 68.2 137 35.8
FAN17G1608 Fragaria x ananassa HOM05D003040 ORTHO05D003443 6.6e-10 68.2 142 34.5
PSO170G3622 Papaver somniferum HOM05D003040 ORTHO05D003443 6.6e-10 68.2 133 37.6
Lsat_1_v5_gn_9_48880 Lactuca sativa HOM05D003040 ORTHO05D003443 1.1e-09 67.4 140 37.9
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.5e-09 67.0 140 34.3
FAN14G2832 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.5e-09 67.0 147 32.7
Glyma.18G241600 Glycine max HOM05D003040 ORTHO05D003443 1.5e-09 67.0 144 33.3
Solyc11g008880.2 Solanum lycopersicum HOM05D003040 ORTHO05D003443 1.5e-09 67.0 134 35.1
PGSC0003DMG402004586 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.5e-09 67.0 136 37.5
Lsat_1_v5_gn_2_17620 Lactuca sativa HOM05D003040 ORTHO05D003443 1.9e-09 66.6 155 31.6
Dinv29107 Davidia involucrata HOM05D003040 ORTHO05D003443 2.5e-09 66.2 136 34.6
Lj1g0018351 Lotus japonicus HOM05D003040 ORTHO05D003443 2.5e-09 66.2 153 33.3
Manes.13G005800 Manihot esculenta HOM05D003040 ORTHO05D003443 2.5e-09 66.2 142 37.3
Medtr7g079870 Medicago truncatula HOM05D003040 ORTHO05D003443 2.5e-09 66.2 143 33.6
Phvul.008G054500 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 2.5e-09 66.2 146 31.5
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 3.3e-09 65.9 148 34.5
Cc09_g03590 Coffea canephora HOM05D003040 ORTHO05D003443 3.3e-09 65.9 141 32.6
Eucgr.H01387 Eucalyptus grandis HOM05D003040 ORTHO05D003443 3.3e-09 65.9 146 33.6
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 3.3e-09 65.9 142 33.8
FvH4_6g00540 Fragaria vesca HOM05D003040 ORTHO05D003443 3.3e-09 65.9 132 33.3
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.3e-09 65.9 142 33.8
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.3e-09 65.9 142 33.8
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.3e-09 65.9 140 34.3
Gohir.A02G017900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 3.3e-09 65.9 134 36.6
HanXRQChr01g0021741 Helianthus annuus HOM05D003040 ORTHO05D003443 3.3e-09 65.9 135 36.3
HPP92_000352 Vanilla planifolia HOM05D003040 ORTHO05D003443 3.3e-09 65.9 130 36.9
HPP92_000419 Vanilla planifolia HOM05D003040 ORTHO05D003443 3.3e-09 65.9 130 36.9
BraA02t05329Z Brassica rapa HOM05D003040 ORTHO05D003443 4.3e-09 65.5 137 35.0
VMungo1383G1123 Vigna mungo HOM05D003040 ORTHO05D003443 4.3e-09 65.5 144 34.0
Cpa.g.c26337.4 Carica papaya HOM05D003040 ORTHO05D003443 5.6e-09 65.1 149 32.2
Duzib177G0951 Durio zibethinus HOM05D003040 ORTHO05D003443 5.6e-09 65.1 134 36.6
Lsat_1_v5_gn_2_48200 Lactuca sativa HOM05D003040 ORTHO05D003443 5.6e-09 65.1 155 34.2
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 5.6e-09 65.1 136 33.8
CANSAT54G0604 Cannabis sativa HOM05D003040 ORTHO05D003443 7.3e-09 64.7 154 35.1
Duzib151G0919 Durio zibethinus HOM05D003040 ORTHO05D003443 7.3e-09 64.7 137 39.4
Manes.12G006100 Manihot esculenta HOM05D003040 ORTHO05D003443 7.3e-09 64.7 148 34.5
Aa31LG11G13170 Aethionema arabicum HOM05D003040 ORTHO05D003443 9.5e-09 64.3 147 33.3
Glyma.09G250900 Glycine max HOM05D003040 ORTHO05D003443 9.5e-09 64.3 144 31.2
MELO3C010062.2 Cucumis melo HOM05D003040 ORTHO05D003443 1.2e-08 63.9 149 32.2
Migut.F02119 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.2e-08 63.9 141 33.3
HanXRQChr10g0293921 Helianthus annuus HOM05D003040 ORTHO05D003443 1.2e-08 63.9 158 32.9
Nitab4.5_0001308g0120 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.2e-08 63.9 138 31.9
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.2e-08 63.9 140 34.3
Potri.019G053300 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.2e-08 63.9 148 31.8
Atru.chr12.1791 Acer truncatum HOM05D003040 ORTHO05D003443 1.6e-08 63.5 146 32.9
Actinidia35925 Actinidia chinensis HOM05D003040 ORTHO05D003443 1.6e-08 63.5 167 34.1
Dinv22709 Davidia involucrata HOM05D003040 ORTHO05D003443 1.6e-08 63.5 154 34.4
TWI36G0037 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 1.6e-08 63.5 145 33.8
Gohir.D04G025900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 2.1e-08 63.2 151 32.5
Sed0022991 Sechium edule HOM05D003040 ORTHO05D003443 2.1e-08 63.2 155 33.5
HPP92_009970 Vanilla planifolia HOM05D003040 ORTHO05D003443 2.1e-08 63.2 131 30.5
HanXRQChr02g0039671 Helianthus annuus HOM05D003040 ORTHO05D003443 2.8e-08 62.8 139 36.7
SEGI_31526 Sequoiadendron giganteum HOM05D001059 ORTHO05D000873 2.8e-08 62.8 144 29.9
ClCG03G010790 Citrullus lanatus HOM05D003040 ORTHO05D003443 3.6e-08 62.4 144 33.3
Prupe.6G360900 Prunus persica HOM05D003040 ORTHO05D003443 3.6e-08 62.4 145 31.0
TWI75G0608 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 3.6e-08 62.4 141 34.0
CAN.G484.127 Capsicum annuum HOM05D003040 ORTHO05D003443 4.7e-08 62.0 133 36.1
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 4.7e-08 62.0 156 34.0
Ca_07978_v3 Cicer arietinum L. HOM05D003040 ORTHO05D003443 6.1e-08 61.6 141 31.9
Gohir.D02G020100 Gossypium hirsutum HOM05D003040 ORTHO05D003443 6.1e-08 61.6 151 35.8
TPR.G2917 Trifolium pratense HOM05D003040 ORTHO05D003443 6.1e-08 61.6 147 32.7
Nitab4.5_0001653g0110 Nicotiana tabacum HOM05D003040 ORTHO05D003443 8.0e-08 61.2 130 33.8
CANSAT78G2083 Cannabis sativa HOM05D003040 ORTHO05D003443 1.0e-07 60.8 156 31.4
Migut.F01874 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.0e-07 60.8 165 30.3
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 1.0e-07 60.8 146 31.5
SHI13724 Sapria himalayana HOM05D003040 ORTHO05D003443 1.4e-07 60.5 151 34.4
Sopen11g004660 Solanum pennellii HOM05D003040 ORTHO05D003443 1.4e-07 60.5 131 32.8
A02p03580 Brassica napus HOM05D003040 ORTHO05D003443 1.8e-07 60.1 137 33.6
Cc03_g10850 Coffea canephora HOM05D003040 ORTHO05D003443 1.8e-07 60.1 144 34.7
Gorai.005G025300 Gossypium raimondii HOM05D003040 ORTHO05D003443 1.8e-07 60.1 151 35.1
Phvul.008G018000 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 1.8e-07 60.1 150 34.0
Cfa008707 Carpinus fangiana HOM05D003040 ORTHO05D003443 2.3e-07 59.7 71 47.9
Gorai.012G028500 Gossypium raimondii HOM05D003040 ORTHO05D003443 2.3e-07 59.7 139 34.5
HanXRQChr14g0431461 Helianthus annuus HOM05D003040 ORTHO05D003443 2.3e-07 59.7 166 28.9
Lalb_Chr10g0092111 Lupinus albus HOM05D003040 ORTHO05D003443 2.3e-07 59.7 140 32.1
SalBow6G3188 Salvia bowleyana HOM05D003040 ORTHO05D003443 3.0e-07 59.3 157 29.9
Carub.0006s1469 Capsella rubella HOM05D003040 ORTHO05D003443 4.0e-07 58.9 140 37.9
Oeu007221.1 Olea europaea HOM05D003040 ORTHO05D003443 4.0e-07 58.9 133 36.8
Psat3g138480 Pisum sativum HOM05D003040 ORTHO05D003443 4.0e-07 58.9 149 32.2
TWI09G0779 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 4.0e-07 58.9 145 33.1
MSTRG.24594 Avicennia marina HOM05D003040 ORTHO05D003443 5.2e-07 58.5 128 33.6
Glyma.08G259300 Glycine max HOM05D003040 ORTHO05D003443 5.2e-07 58.5 153 31.4
RcHm_v2.0_Chr3g0447931 Rosa chinensis HOM05D003040 ORTHO05D003443 5.2e-07 58.5 145 31.7
TPR.G30349 Trifolium pratense HOM05D003040 ORTHO05D003443 6.8e-07 58.2 136 36.0
CARHR196740 Cardamine hirsuta HOM05D003040 ORTHO05D003443 8.9e-07 57.8 130 32.3
Haze_04549 Corylus avellana HOM05D003040 ORTHO05D003443 8.9e-07 57.8 136 33.1
ECA232G2830 Erigeron canadensis HOM05D003040 ORTHO05D003443 1.5e-06 57.0 129 31.0
Gohir.A05G391300 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.5e-06 57.0 139 32.4
arahy.Tifrunner.gnm1.ann1.UTHB0M Arachis hypogaea HOM05D003040 ORTHO05D003443 2.0e-06 56.6 145 31.0
Sabra19G0062800 Salix brachista HOM05D003040 ORTHO05D003443 2.0e-06 56.6 132 32.6
HPP92_025248 Vanilla planifolia HOM05D003040 ORTHO05D003443 2.0e-06 56.6 140 30.0
arahy.Tifrunner.gnm1.ann1.D458E1 Arachis hypogaea HOM05D003040 ORTHO05D003443 2.6e-06 56.2 147 31.3
arahy.Tifrunner.gnm1.ann1.EIQ915 Arachis hypogaea HOM05D003040 ORTHO05D003443 2.6e-06 56.2 147 31.3
arahy.Tifrunner.gnm1.ann1.XQNQ91 Arachis hypogaea HOM05D003040 ORTHO05D003443 2.6e-06 56.2 145 29.7
CAN.G710.53 Capsicum annuum HOM05D003040 ORTHO05D003443 2.6e-06 56.2 155 34.8
Ciclev10012906m.g Citrus clementina HOM05D003040 ORTHO05D003443 2.6e-06 56.2 148 31.8
Lsat_1_v5_gn_1_69541 Lactuca sativa HOM05D003040 ORTHO05D003443 2.6e-06 56.2 144 29.2
MBI07_g04009_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010091 3.4e-06 55.8 72 44.4
C02p08390 Brassica napus HOM05D003040 ORTHO05D003443 4.4e-06 55.5 137 29.9
C09p60680 Brassica napus HOM05D003040 ORTHO05D003443 4.4e-06 55.5 133 34.6
BolC9t58899H Brassica oleracea HOM05D003040 ORTHO05D003443 4.4e-06 55.5 133 34.6
Lalb_Chr03g0038441 Lupinus albus HOM05D003040 ORTHO05D003443 4.4e-06 55.5 154 31.8
VMungo1383G1471 Vigna mungo HOM05D003040 ORTHO05D003443 4.4e-06 55.5 156 31.4
BolC2t06757H Brassica oleracea HOM05D003040 ORTHO05D003443 5.8e-06 55.1 137 29.9
Glyma.20G219000 Glycine max HOM05D003040 ORTHO05D003443 5.8e-06 55.1 149 33.6
AL6G27430 Arabidopsis lyrata HOM05D003040 ORTHO05D003443 7.5e-06 54.7 134 36.6
COL.COLO4_27384 Corchorus olitorius HOM05D003040 ORTHO05D003443 9.8e-06 54.3 140 30.0
CsaV3_1G044570 Cucumis sativus L. HOM05D003040 ORTHO05D003443 9.8e-06 54.3 182 29.1


User provided reference genes

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