Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 5.6e-103 377.5 175 100.0
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 1.6e-102 375.9 175 98.9
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 2.1e-102 375.6 175 98.9
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 3.7e-102 374.8 175 98.9
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 3.7e-102 374.8 175 98.9
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 3.7e-102 374.8 175 98.3
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 6.2e-102 374.0 175 98.9
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 8.1e-102 373.6 175 98.3
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 1.1e-101 373.2 175 98.9
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 2.4e-101 372.1 175 98.3
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 1.5e-100 369.4 175 97.1
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.5e-100 369.4 175 97.1
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.0e-99 366.7 175 96.6
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 1.3e-99 366.3 175 95.4
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 96.0
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 96.0
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 94.9
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 3.8e-99 364.8 175 95.4
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 6.5e-99 364.0 175 95.4
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 6.5e-99 364.0 175 95.4
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 6.5e-99 364.0 175 95.4
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 1.1e-98 363.2 175 94.9
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 94.3
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 94.3
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 94.3
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.5e-98 362.1 175 93.7
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 94.3
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.2e-98 361.3 175 94.3
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 4.2e-98 361.3 175 93.1
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 94.9
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.0
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 94.3
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.6
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 93.1
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 2.1e-97 359.0 175 94.3
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.0
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.6
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.6
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 93.7
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 93.7
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.0
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 3.5e-97 358.2 174 93.1
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 91.4
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 4.6e-97 357.8 174 93.1
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 93.1
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 91.4
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 92.6
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 91.4
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 92.0
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 92.0
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 92.0
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 2.3e-96 355.5 172 91.9
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 92.0
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 92.6
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 92.6
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 92.6
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 92.0
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 91.4
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 90.9
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 90.9
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 92.0
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 92.0
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 92.0
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 6.7e-96 354.0 177 92.7
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 91.4
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 92.5
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.1e-95 353.2 173 90.8
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 92.0
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 92.0
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.9
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 91.4
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.3
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.9e-95 352.4 174 89.1
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.9
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 90.3
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 3.3e-95 351.7 174 90.8
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 3.3e-95 351.7 174 90.8
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 92.0
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 92.5
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 90.9
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 90.3
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.7
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 7.4e-95 350.5 172 90.7
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.7
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 90.9
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.3e-94 349.7 175 90.3
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 2.8e-94 348.6 174 90.2
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 90.3
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 1.8e-93 345.9 174 91.4
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.8e-93 345.9 173 93.1
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 90.9
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.8e-93 345.9 173 90.2
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 1.8e-93 345.9 175 89.1
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 1.8e-93 345.9 169 90.5
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 2.4e-93 345.5 172 90.7
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 4.0e-93 344.7 175 89.1
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 1.2e-92 343.2 175 88.6
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 1.0e-91 340.1 175 85.7
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.8e-91 338.2 175 88.6
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 5.5e-90 334.3 175 86.3
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 1.9e-87 325.9 175 82.3
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 4.3e-87 324.7 244 66.4
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 6.3e-86 320.9 174 80.5
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 1.4e-85 319.7 174 79.3
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 5.3e-85 317.8 173 82.1
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 1.2e-81 306.6 173 78.0
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 4.6e-81 304.7 150 90.0
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 6.1e-81 304.3 167 79.0
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 5.7e-79 297.7 181 79.6
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 2.8e-78 295.4 175 73.7
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 4.2e-74 281.6 165 72.1
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 5.1e-72 274.6 167 79.0
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 6.7e-72 274.2 131 93.1
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 5.7e-71 271.2 132 91.7
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.8e-69 266.2 131 88.5
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 4.5e-68 261.5 164 68.3
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 8.8e-64 247.3 125 90.4
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 3.8e-59 231.9 124 83.9
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 8.5e-59 230.7 112 92.0
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 4.2e-58 228.4 119 87.4
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 6.1e-57 224.6 125 82.4
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 9.8e-55 217.2 171 56.7
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 6.3e-54 214.5 114 86.0
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 5.0e-51 204.9 112 77.7
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 7.2e-50 201.1 104 87.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 9.1e-45 184.1 142 64.8
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.1e-42 177.2 95 85.3
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 1.8e-37 159.8 88 81.8
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 5.6e-34 148.3 177 48.6
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 3.6e-33 145.6 113 62.8
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 1.3e-30 137.1 114 61.4
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 9.2e-29 131.0 66 89.4
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 6.8e-24 114.8 96 56.2


User provided reference genes

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