Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-311 1072.4 535 100.0
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 4.5e-220 768.1 535 77.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.1e-218 763.5 559 74.4
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 8.3e-190 667.5 511 71.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-139 501.1 458 64.8
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-84 317.8 338 58.6
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-84 317.8 338 58.6
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 6.2e-84 315.8 338 58.0
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.4e-83 314.7 338 58.3
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 8.9e-83 312.0 338 58.0
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.6e-82 310.5 341 56.0
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 3.4e-82 310.1 340 55.9
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 5.8e-82 309.3 353 54.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.7e-81 307.8 341 55.4
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.2e-79 301.6 343 54.8
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 5.0e-78 296.2 450 47.8
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.1e-69 268.5 314 54.1
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.4e-64 250.8 296 51.4
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 6.0e-63 246.1 296 49.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 5.1e-62 243.0 326 47.5
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.9e-61 241.1 303 50.5
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.6e-60 238.0 305 49.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.8e-60 237.3 296 50.0
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 3.6e-60 236.9 295 50.8
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 6.2e-60 236.1 343 45.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 6.2e-60 236.1 351 44.2
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 8.1e-60 235.7 297 50.2
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.4e-59 235.0 148 81.8
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.4e-59 234.2 290 51.4
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.0e-59 233.4 345 44.9
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 4.0e-59 233.4 343 44.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.5e-58 231.5 312 48.7
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.0e-58 231.1 301 48.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 3.4e-58 230.3 343 43.7
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 7.6e-58 229.2 306 48.4
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.3e-57 228.4 301 48.2
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.9e-57 227.3 287 50.9
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.8e-57 226.9 312 44.2
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.4e-57 225.7 299 47.8
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.4e-56 224.2 326 43.9
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.6e-55 221.5 305 47.2
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-55 221.1 206 65.0
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.5e-55 220.3 279 50.5
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 4.6e-55 219.9 296 47.6
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 4.6e-55 219.9 357 42.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.0e-55 219.5 283 49.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 7.8e-55 219.2 294 48.6
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.0e-54 218.8 306 48.0
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.0e-54 218.8 304 47.7
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.0e-54 218.8 225 55.1
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.3e-54 218.4 224 54.9
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 2.3e-54 217.6 330 43.0
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.3e-54 217.6 295 49.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 3.9e-54 216.9 300 46.3
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.9e-54 216.9 225 55.6
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 8.7e-54 215.7 306 47.7
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.1e-53 215.3 285 48.4
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.5e-53 214.9 225 55.6
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.9e-53 214.5 226 54.9
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.9e-53 214.5 297 46.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.3e-53 213.8 306 45.1
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 4.3e-53 213.4 296 48.0
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 5.6e-53 213.0 313 46.0
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 7.3e-53 212.6 294 47.6
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.6e-52 211.5 290 47.9
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 3.6e-52 210.3 291 46.0
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 3.6e-52 210.3 291 46.4
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 6.2e-52 209.5 283 48.1
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 6.2e-52 209.5 324 43.2
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.8e-51 208.0 306 43.8
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.4e-51 207.6 362 39.5
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 6.9e-51 206.1 167 65.9
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 6.9e-51 206.1 222 53.2
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.9e-51 206.1 325 41.5
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.2e-50 205.3 219 54.8
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.5e-50 204.9 225 53.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.5e-50 204.9 269 47.6
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 9.9e-50 202.2 222 52.3
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.3e-49 201.8 290 45.9
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.8e-49 200.3 290 46.6
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.8e-49 200.3 147 69.4
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.9e-49 199.9 285 43.9
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.1e-48 198.7 225 52.4
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 7.1e-48 196.1 220 52.3
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 9.3e-48 195.7 276 45.7
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 2.1e-47 194.5 298 47.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.7e-47 194.1 257 45.5
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.5e-47 193.7 353 39.7
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 7.9e-47 192.6 214 52.8
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 7.9e-47 192.6 237 50.2
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 3.0e-46 190.7 219 49.8
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 8.7e-46 189.1 149 63.8
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 3.3e-45 187.2 151 64.2
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 5.6e-45 186.4 148 66.9
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 9.6e-45 185.7 225 48.9
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 9.6e-45 185.7 216 50.5
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.1e-44 184.5 203 53.2
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 6.2e-44 183.0 308 42.2
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 8.1e-44 182.6 325 39.7
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 2.4e-43 181.0 256 45.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 4.0e-43 180.3 210 51.0
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.2e-42 178.7 216 49.5
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 4.5e-42 176.8 213 49.8
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 6.4e-41 172.9 213 46.9
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 6.0e-39 166.4 259 42.9
BcaC06g35306 Brassica carinata HOM05D005250 ORTHO05D006342 6.0e-39 166.4 79 100.0
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.5e-37 161.8 152 56.6
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.4e-37 159.5 108 73.1
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 6.2e-36 156.4 180 51.1
BcaC04g19886 Brassica carinata HOM05D005250 ORTHO05D006342 1.8e-30 138.3 182 48.4
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 9.7e-29 132.5 292 36.6
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 3.8e-25 120.6 100 61.0
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-24 118.6 154 42.9
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.7e-21 106.7 90 60.0
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 6.3e-20 103.2 204 34.3
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 8.2e-20 102.8 206 34.0
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.1e-19 102.4 277 32.5
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.4e-19 102.1 76 63.2
BcaB05g23123 Brassica carinata HOM05D005250 ORTHO05D006342 2.4e-19 101.3 93 63.4
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 5.3e-19 100.1 201 32.3
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 1.5e-18 98.6 59 78.0
A02p31010 Brassica napus HOM05D005250 ORTHO05D096592 2.6e-18 97.8 102 59.8
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 9.4e-16 89.4 48 93.8
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 9.4e-16 89.4 48 93.8
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 9.4e-16 89.4 48 93.8
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-15 89.0 156 42.9
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.0e-14 85.9 134 44.8
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.0e-14 85.9 134 44.0
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.4e-13 79.7 89 46.1
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 9.1e-11 72.8 51 68.6
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-10 72.0 50 74.0
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-10 72.0 50 74.0
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-10 71.2 123 35.0
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 5.0e-09 67.0 56 64.3
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 7.2e-08 63.2 49 61.2
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.2e-08 63.2 159 34.0
Aa31LG10G16160 Aethionema arabicum HOM05D000068 ORTHO05D000084 6.1e-07 60.1 168 31.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.4e-06 58.9 67 50.7


User provided reference genes

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