Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 5.4e-167 590.9 292 100.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 9.6e-164 580.1 304 95.7
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-155 553.1 281 98.2
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.3e-155 553.1 287 96.5
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 9.9e-153 543.5 299 92.6
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 8.7e-141 503.8 285 88.4
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 4.2e-135 485.0 283 84.8
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 7.1e-135 484.2 283 85.9
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.2e-134 483.4 283 84.8
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.1e-134 482.6 282 85.1
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 2.5e-132 475.7 283 84.5
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.8e-130 469.5 283 83.4
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 6.5e-128 461.1 283 82.3
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 1.1e-124 450.3 294 77.9
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 7.4e-124 447.6 300 77.0
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-117 426.8 254 83.9
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 3.7e-115 418.7 263 81.0
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 6.5e-112 407.9 284 71.5
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.8e-101 373.2 283 64.3
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 5.7e-100 368.2 293 63.5
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 7.5e-100 367.9 279 63.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.3e-99 367.1 333 59.2
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.3e-99 367.1 285 63.2
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.7e-99 366.7 279 65.2
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 2.2e-99 366.3 282 63.5
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 2.4e-98 362.8 289 64.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.6e-97 360.1 278 65.8
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 2.7e-97 359.4 283 64.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 2.5e-95 352.8 297 60.3
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 7.2e-95 351.3 289 61.6
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.7e-94 349.4 283 60.8
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 8.8e-93 344.4 288 60.4
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 8.8e-93 344.4 291 60.1
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.5e-92 343.6 289 60.9
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.0e-92 343.2 287 60.3
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.6e-92 342.8 283 59.7
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 4.4e-92 342.0 283 61.8
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 5.7e-92 341.7 284 60.2
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 5.7e-92 341.7 288 60.4
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.3e-91 340.5 291 59.5
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.2e-91 339.7 291 58.1
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 2.8e-91 339.3 289 59.9
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 5.4e-90 335.1 297 57.9
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 5.4e-90 335.1 282 60.3
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 7.0e-90 334.7 289 58.8
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 1.2e-89 334.0 288 58.0
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 2.0e-89 333.2 313 56.9
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.0e-89 333.2 290 58.3
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 4.5e-89 332.0 288 59.7
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 4.5e-89 332.0 296 55.7
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 5.9e-89 331.6 174 93.7
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.0e-88 330.9 278 59.7
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.2e-88 329.7 290 58.3
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.9e-88 329.3 308 56.5
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 8.5e-88 327.8 289 56.4
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 3.2e-87 325.9 324 54.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 8.0e-86 321.2 291 55.7
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 8.0e-86 321.2 291 55.7
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.0e-85 320.9 264 62.9
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.5e-84 317.0 278 58.3
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 2.0e-84 316.6 293 53.6
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 2.0e-84 316.6 289 57.4
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 3.4e-84 315.8 283 59.0
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.4e-84 315.8 286 56.3
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 4.4e-84 315.5 285 57.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 4.4e-84 315.5 291 58.8
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 1.3e-83 313.9 285 58.9
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 7.0e-82 308.1 289 54.0
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 7.0e-82 308.1 286 55.6
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 9.2e-82 307.8 273 56.8
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.0e-81 306.6 288 56.2
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 4.5e-81 305.4 263 60.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 5.9e-81 305.1 293 53.6
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 1.7e-80 303.5 273 57.1
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 2.5e-79 299.7 290 53.4
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 9.5e-79 297.7 285 57.2
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.1e-78 296.6 294 53.1
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 6.8e-77 291.6 220 63.2
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.5e-76 290.4 278 56.1
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 2.2e-75 286.6 291 51.2
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.9e-75 286.2 284 54.2
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 6.4e-75 285.0 288 53.5
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.6e-73 280.4 284 51.1
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 3.0e-72 276.2 287 51.6
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 5.0e-72 275.4 289 51.6
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.1e-71 274.2 266 54.1
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 5.2e-69 265.4 237 57.4
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 2.6e-68 263.1 306 50.7
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 5.4e-66 255.4 280 50.4
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 9.2e-66 254.6 174 69.0
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.9e-63 246.9 173 67.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 3.4e-60 236.1 289 46.4
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 4.9e-59 232.3 285 48.1
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 4.1e-58 229.2 166 67.5
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.6e-57 227.3 295 44.7
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 5.1e-56 222.2 277 46.6
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 9.5e-55 218.0 269 43.5
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.6e-52 209.9 184 56.5
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.9e-52 208.0 282 41.1
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.1e-47 194.5 281 40.6
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.6e-46 189.5 118 75.4
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.6e-46 189.5 118 75.4
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.7e-46 189.1 300 40.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.1e-45 188.0 268 40.3
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 5.2e-45 185.7 319 38.6
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 6.9e-45 185.3 95 90.5
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 8.9e-45 184.9 281 39.5
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 3.4e-44 183.0 284 41.5
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 7.6e-44 181.8 286 39.9
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 1.1e-42 177.9 265 42.3
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 5.4e-42 175.6 280 40.7
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.9e-40 169.5 103 76.7
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.5e-39 166.8 181 48.1
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.0e-37 159.5 214 44.4
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 6.9e-37 158.7 286 37.1
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 9.9e-36 154.8 92 79.3
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.3e-35 154.5 322 34.8
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 2.9e-35 153.3 174 46.6
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.4e-35 152.1 288 37.8
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.1e-34 151.4 152 51.3
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-34 150.6 116 62.9
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 2.4e-34 150.2 229 41.5
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.2e-34 149.4 288 37.8
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.3e-32 144.4 211 41.7
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 2.9e-27 126.7 152 42.8
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.1e-25 120.6 192 39.1
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-24 117.5 98 59.2
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 6.2e-22 109.0 110 55.5
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.0e-21 106.3 57 86.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.2e-19 100.5 152 38.8
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.9e-19 99.4 152 38.2
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.1e-15 88.2 47 85.1
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 2.5e-10 70.5 51 64.7
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.6e-09 67.8 94 43.6
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.1e-09 65.9 97 36.1
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.0e-08 63.5 68 50.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 5.1e-08 62.8 74 50.0
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 2.2e-06 57.4 62 51.6
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 2.8e-06 57.0 60 53.3
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 4.8e-06 56.2 94 37.2
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 8.2e-06 55.5 64 50.0


User provided reference genes

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