Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 4.6e-132 474.6 240 100.0
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 1.1e-130 469.9 240 99.2
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 1.5e-130 469.5 240 99.2
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 7.7e-127 457.2 240 94.6
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 1.7e-126 456.1 240 94.2
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 5.8e-74 281.6 240 65.8
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 9.2e-72 274.2 226 63.3
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 1.6e-71 273.5 226 62.8
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 1.6e-71 273.5 226 63.3
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 6.6e-70 268.1 219 63.0
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 3.3e-69 265.8 226 61.5
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 3.3e-69 265.8 226 61.5
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 4.4e-66 255.4 233 57.5
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 5.1e-62 241.9 165 74.5
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 9.9e-50 201.1 214 50.5
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 4.3e-45 185.7 219 49.8
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.4e-43 180.6 226 48.2
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 5.5e-32 142.1 222 41.0
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 1.1e-27 127.9 204 40.2
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.0e-26 123.6 204 39.7
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.6e-26 123.2 209 37.8
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 6.5e-25 118.6 225 36.9
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 2.5e-24 116.7 157 42.0
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 3.2e-24 116.3 228 36.8
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 3.2e-24 116.3 228 36.8
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 4.2e-24 115.9 224 36.6
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 7.2e-24 115.2 228 36.4
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 9.3e-24 114.8 226 37.6
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 9.3e-24 114.8 226 37.6
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 1.2e-23 114.4 222 37.8
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 4.6e-23 112.5 223 37.2
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-22 111.3 232 36.6
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 1.0e-22 111.3 232 36.6
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 1.3e-22 110.9 220 36.4
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 1.3e-22 110.9 163 40.5
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 1.8e-22 110.5 221 37.1
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 3.0e-22 109.8 211 33.6
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 3.9e-22 109.4 225 36.9
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 3.9e-22 109.4 224 32.6
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 5.1e-22 109.0 229 36.7
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 8.7e-22 108.2 226 33.6
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.1e-21 107.8 200 35.5
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 2.2e-20 103.6 115 45.2
BolC6t39791H Brassica oleracea HOM05D000535 ORTHO05D009010 6.3e-20 102.1 207 34.3
CARHR066380 Cardamine hirsuta HOM05D000535 ORTHO05D000427 8.2e-20 101.7 222 32.9
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.8e-19 100.5 217 35.5
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 3.1e-19 99.8 226 32.7
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 3.1e-19 99.8 229 31.4
AT1G73325 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 4.1e-19 99.4 226 32.3
Sp5g28260 Schrenkiella parvula HOM05D000535 ORTHO05D009010 5.3e-19 99.0 222 32.4
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 6.9e-19 98.6 159 38.4
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 6.9e-19 98.6 207 33.8
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 9.1e-19 98.2 212 34.9
Thhalv10019129m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 9.1e-19 98.2 208 34.1
BcaB03g15050 Brassica carinata HOM05D000535 ORTHO05D000427 1.2e-18 97.8 203 34.5
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 1.5e-18 97.4 232 31.5
Aa31LG4G3590 Aethionema arabicum HOM05D000535 ORTHO05D009010 2.0e-18 97.1 199 35.7
BcaB07g32466 Brassica carinata HOM05D007344 ORTHO05D009010 2.0e-18 97.1 73 65.8
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 2.6e-18 96.7 205 32.7
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 4.5e-18 95.9 226 32.7
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 7.7e-18 95.1 202 37.1
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 7.7e-18 95.1 202 37.1
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 1.0e-17 94.7 227 31.7
A07p39300 Brassica napus HOM05D000535 ORTHO05D009010 1.0e-17 94.7 207 32.9
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-17 94.7 227 31.7
BraA07t31479Z Brassica rapa HOM05D000535 ORTHO05D009010 1.0e-17 94.7 207 32.9
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 1.7e-17 94.0 219 35.6
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 2.2e-17 93.6 207 32.4
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 5.0e-17 92.4 205 33.2
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 5.0e-17 92.4 137 38.0
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 6.5e-17 92.0 215 32.6
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 8.5e-17 91.7 201 36.8
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 1.9e-16 90.5 219 34.2
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 1.9e-16 90.5 201 36.8
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 2.5e-16 90.1 217 34.1
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 2.5e-16 90.1 217 34.1
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 9.4e-16 88.2 216 31.9
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 9.4e-16 88.2 216 31.9
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 2.7e-15 86.7 221 33.5
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 4.7e-15 85.9 215 31.6
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 4.7e-15 85.9 215 31.6
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 4.7e-15 85.9 235 32.3
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 6.1e-15 85.5 212 32.5
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 6.1e-15 85.5 235 32.3
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 6.1e-15 85.5 235 32.3
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 2.0e-13 80.5 163 35.0
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 2.6e-13 80.1 219 32.4
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 4.4e-13 79.3 82 47.6
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 2.2e-12 77.0 163 34.4
THA.LOC104812195 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 1.1e-11 74.7 159 32.1
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 1.4e-11 74.3 165 33.3
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 3.1e-11 73.2 216 30.1
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 3.1e-11 73.2 216 30.1
PSO017G1606 Papaver somniferum HOM05D000535 ORTHO05D000427 6.9e-11 72.0 165 32.1
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 9.1e-11 71.6 189 31.7
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 9.1e-11 71.6 189 31.7
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 9.1e-11 71.6 189 31.7
Manes.01G126100 Manihot esculenta HOM05D000535 ORTHO05D000427 1.5e-10 70.9 155 34.8
PSO170G4576 Papaver somniferum HOM05D000535 ORTHO05D000427 2.0e-10 70.5 163 31.3
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 3.4e-10 69.7 192 30.7
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 5.9e-10 68.9 192 31.2
Potri.004G067900 Populus trichocarpa HOM05D000535 ORTHO05D000427 7.7e-10 68.6 218 29.8
Manes.01G126000 Manihot esculenta HOM05D000535 ORTHO05D000427 1.0e-09 68.2 159 34.6
TAR371G0845 Trochodendron aralioides HOM05D000535 ORTHO05D000427 1.0e-09 68.2 150 32.7
Psat5g029920 Pisum sativum HOM05D000535 ORTHO05D013302 1.3e-09 67.8 208 28.4
Thecc.05G197900 Theobroma cacao HOM05D000535 ORTHO05D000427 1.3e-09 67.8 167 34.1
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 2.2e-09 67.0 201 31.3
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 2.2e-09 67.0 201 31.3
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 2.2e-09 67.0 218 31.2
EL10Ac6g13199 Beta vulgaris HOM05D000535 ORTHO05D000427 5.0e-09 65.9 159 29.6
CARHR018480 Cardamine hirsuta HOM05D000535 ORTHO05D000427 5.0e-09 65.9 157 29.3
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 6.5e-09 65.5 218 28.4
TPR.G3152 Trifolium pratense HOM05D000535 ORTHO05D013302 6.5e-09 65.5 218 27.5
COL.COLO4_08721 Corchorus olitorius HOM05D000535 ORTHO05D000427 8.5e-09 65.1 167 31.7
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 1.1e-08 64.7 215 28.4
DCAR_011686 Daucus carota HOM05D000535 ORTHO05D000427 2.5e-08 63.5 163 29.4
ECA238G4632 Erigeron canadensis HOM05D000535 ORTHO05D000427 2.5e-08 63.5 214 30.4
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.5e-08 63.5 171 26.9
AUR62028777 Chenopodium quinoa HOM05D000535 ORTHO05D000427 3.2e-08 63.2 158 30.4
FAN08G0118 Fragaria x ananassa HOM05D000535 ORTHO05D000427 3.2e-08 63.2 167 30.5
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 4.2e-08 62.8 167 30.5
BraA07t31310Z Brassica rapa HOM05D008834 ORTHO05D011314 4.2e-08 62.8 194 29.9
Ciclev10016767m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.2e-08 62.8 130 35.4
Lj2g0010766 Lotus japonicus HOM05D000535 ORTHO05D000427 4.2e-08 62.8 220 30.0
CSS0038986 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.5e-08 62.4 164 30.5
Cc00_g34040 Coffea canephora HOM05D000535 ORTHO05D000427 5.5e-08 62.4 171 30.4
Cc04_g08410 Coffea canephora HOM05D000535 ORTHO05D000427 5.5e-08 62.4 174 28.7
CiPaw.11G155200 Carya illinoinensis HOM05D000535 ORTHO05D000427 7.2e-08 62.0 155 32.3
Lj3g0004853 Lotus japonicus HOM05D000535 ORTHO05D000427 7.2e-08 62.0 160 33.1
Lalb_Chr03g0031361 Lupinus albus HOM05D000535 ORTHO05D000427 7.2e-08 62.0 124 34.7
MBI18_g32029_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 7.2e-08 62.0 151 31.1
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 9.4e-08 61.6 171 30.4
Cc00_g28690 Coffea canephora HOM05D000535 ORTHO05D000427 9.4e-08 61.6 171 30.4
Oeu020484.1 Olea europaea HOM05D000535 ORTHO05D000427 9.4e-08 61.6 183 31.7
Ah.02g129700 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.2e-07 61.2 162 29.6
Lalb_Chr19g0133691 Lupinus albus HOM05D000535 ORTHO05D000427 1.2e-07 61.2 147 29.9
AUR62028778 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.6e-07 60.8 225 23.6
Ca_15754_v3 Cicer arietinum L. HOM05D000535 ORTHO05D013302 1.6e-07 60.8 211 27.5
CANSAT56G4213 Cannabis sativa HOM05D000535 ORTHO05D000427 2.1e-07 60.5 136 33.8
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 2.7e-07 60.1 160 30.0
Lsat_1_v5_gn_2_112040 Lactuca sativa HOM05D000535 ORTHO05D000427 2.7e-07 60.1 205 27.3
MBI06_g27485_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 2.7e-07 60.1 161 30.4
QL09p011651 Quercus lobata HOM05D000535 ORTHO05D000427 2.7e-07 60.1 153 33.3
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 3.6e-07 59.7 178 29.8
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 3.6e-07 59.7 140 32.9
CAN.G765.29 Capsicum annuum HOM05D000535 ORTHO05D011982 4.7e-07 59.3 168 31.0
ClCG02G016010 Citrullus lanatus HOM05D000535 ORTHO05D000427 4.7e-07 59.3 219 27.9
Glyma.16G212100 Glycine max HOM05D000535 ORTHO05D000427 4.7e-07 59.3 167 33.5
Hma1.2p1_0060F.1_g032810 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.7e-07 59.3 159 30.2
Cc00_g28730 Coffea canephora HOM05D000535 ORTHO05D000427 6.1e-07 58.9 171 30.4
CsaV3_2G005020 Cucumis sativus L. HOM05D000535 ORTHO05D000427 6.1e-07 58.9 139 34.5
VMungo1127G0967 Vigna mungo HOM05D000535 ORTHO05D000427 6.1e-07 58.9 162 29.0
ECA233G0974 Erigeron canadensis HOM05D021928 ORTHO05D015640 8.0e-07 58.5 159 31.4
PGR142G1324 Punica granatum HOM05D000535 ORTHO05D000427 1.0e-06 58.2 147 30.6
HanXRQChr16g0506311 Helianthus annuus HOM05D000535 ORTHO05D000427 1.4e-06 57.8 208 29.3
HanXRQChr16g0506331 Helianthus annuus HOM05D000535 ORTHO05D000427 1.4e-06 57.8 208 29.3
QL09p011646 Quercus lobata HOM05D000535 ORTHO05D000427 1.4e-06 57.8 155 31.6
CiPaw.11G154900 Carya illinoinensis HOM05D000535 ORTHO05D000427 1.8e-06 57.4 155 30.3
Ca_03923_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 1.8e-06 57.4 147 32.7
ClCG02G015990 Citrullus lanatus HOM05D000535 ORTHO05D000427 1.8e-06 57.4 189 30.2
Phvul.011G166500 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 1.8e-06 57.4 154 29.2
Phvul.011G169900 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 1.8e-06 57.4 157 29.3
TAR629G0176 Trochodendron aralioides HOM05D000535 ORTHO05D000427 1.8e-06 57.4 164 28.7
Lj2g0028248 Lotus japonicus HOM05D000535 ORTHO05D000427 2.3e-06 57.0 182 30.2
Cfa019506 Carpinus fangiana HOM05D000535 ORTHO05D000427 3.0e-06 56.6 157 31.2
Haze_08461 Corylus avellana HOM05D000535 ORTHO05D000427 3.0e-06 56.6 157 30.6
ECA238G3099 Erigeron canadensis HOM05D000535 ORTHO05D000427 3.0e-06 56.6 159 32.7
HanXRQChr05g0158941 Helianthus annuus HOM05D000535 ORTHO05D015640 3.0e-06 56.6 131 30.5
SalBow5G3210 Salvia bowleyana HOM05D000535 ORTHO05D000427 3.0e-06 56.6 166 29.5
Ah.03g135120 Amaranthus hybridus HOM05D000535 ORTHO05D000427 3.9e-06 56.2 169 28.4
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 3.9e-06 56.2 173 28.9
QL09p011635 Quercus lobata HOM05D000535 ORTHO05D000427 3.9e-06 56.2 155 31.6
AUR62005782 Chenopodium quinoa HOM05D000535 ORTHO05D000427 5.2e-06 55.8 160 26.2
Medtr8g461050 Medicago truncatula HOM05D000535 ORTHO05D000427 5.2e-06 55.8 141 27.7
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 6.7e-06 55.5 109 32.1
Lj2P607T10 Lonicera japonica HOM05D000535 ORTHO05D000427 6.7e-06 55.5 163 25.2
Oeu029075.1 Olea europaea HOM05D000535 ORTHO05D000427 6.7e-06 55.5 183 30.1
QL09p011629 Quercus lobata HOM05D000535 ORTHO05D000427 6.7e-06 55.5 155 31.0
QL09p011643 Quercus lobata HOM05D000535 ORTHO05D000427 6.7e-06 55.5 155 31.0
ClCG02G016000 Citrullus lanatus HOM05D000535 ORTHO05D000427 8.8e-06 55.1 164 31.1
Psat1g007640 Pisum sativum HOM05D000535 ORTHO05D000427 8.8e-06 55.1 161 30.4


User provided reference genes

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