Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1999.6 1001 100.0
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1997.2 1001 99.9
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1991.5 1001 99.7
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1987.6 1001 99.3
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1982.6 1001 99.1
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1944.1 1006 96.6
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1882.1 1007 93.6
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1865.1 1007 93.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1825.1 1003 91.3
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1822.0 1003 91.0
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1819.3 1010 90.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1819.3 1008 91.4
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1697.6 1006 85.2
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1690.2 1018 84.6
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1490.3 1014 74.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1483.4 1011 73.3
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1479.2 1013 74.6
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1476.1 1011 74.9
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1015 74.1
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1468.0 1013 73.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1017 73.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1461.4 1016 73.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1460.7 1030 71.5
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1459.1 1017 72.9
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1458.0 1012 73.0
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1456.0 1023 72.3
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1451.0 1013 72.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1448.0 1002 72.9
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1442.6 1020 71.2
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1441.8 1031 71.5
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1437.9 1013 72.9
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1434.1 1021 70.9
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1432.9 1021 70.8
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1432.2 1017 71.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1431.4 1009 72.0
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1430.6 1009 71.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1428.7 1018 72.0
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1424.8 1008 71.8
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 1015 72.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1423.7 1015 71.0
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1014 72.5
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1004 71.8
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1416.0 1016 71.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1415.6 1034 70.1
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1414.8 1034 70.1
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1027 70.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1016 71.4
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1406.3 1045 69.3
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1400.6 1019 71.1
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1400.6 1015 70.5
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 967 73.7
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1395.6 1012 70.7
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1394.8 1055 67.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1391.3 1008 70.5
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1390.9 1003 70.7
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1387.9 1002 70.2
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1387.9 1010 70.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1384.8 1004 69.4
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1383.2 1042 68.0
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1380.5 1035 68.3
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1379.0 1007 69.0
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1378.2 1004 69.1
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1374.8 1012 68.6
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1373.2 1084 66.1
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1368.6 1004 68.6
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1367.8 1005 68.9
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1367.8 1014 68.8
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1365.1 1010 69.5
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1364.4 1007 68.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1362.8 1042 67.4
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1358.2 967 72.2
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 1007 67.6
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1351.3 1041 67.9
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 980 69.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 1014 67.9
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1330.1 1003 68.3
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1329.7 975 69.7
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1328.9 1010 67.2
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1023 65.7
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1312.7 1031 65.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1307.4 1019 65.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1306.6 933 72.2
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1303.1 1003 67.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1296.2 1019 65.2
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1293.5 1020 65.7
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1291.6 1011 66.7
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1286.6 999 67.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1281.2 1109 61.6
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1275.8 983 66.5
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 967 67.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1272.7 1001 65.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1266.9 1006 65.5
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1265.8 1015 65.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1263.8 984 67.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 1009 62.9
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1252.7 1036 62.8
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1251.9 1002 65.2
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1245.7 1007 64.5
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1243.8 1050 62.3
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1224.5 1033 63.0
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1222.6 943 66.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1221.1 1011 63.5
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1211.4 1033 61.8
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1206.4 1141 56.2
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1203.0 920 68.6
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1201.8 997 62.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1191.0 1174 54.7
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1184.5 1044 59.8
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1182.2 1005 60.6
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1180.2 1000 61.0
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1176.4 1010 61.5
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1162.9 1017 61.6
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1161.7 868 68.9
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1148.3 1002 58.8
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1136.3 1021 59.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1103.6 986 60.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1103.2 892 65.2
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1088.6 863 66.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1083.9 934 59.7
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.0e-302 1043.5 812 68.3
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.5e-288 995.7 946 57.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 5.4e-275 951.4 863 58.9
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 7.6e-269 931.0 1035 50.1
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.7e-265 919.8 1046 48.9
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.3e-257 892.9 778 62.0
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 4.2e-251 872.1 978 48.8
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.3e-240 835.9 628 70.9
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.2e-235 819.3 1010 46.0
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 9.3e-235 817.8 626 68.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 9.7e-232 807.7 1013 45.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 5.1e-225 785.4 643 65.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 7.9e-218 761.5 620 64.2
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.9e-212 743.0 1222 39.9
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 4.2e-211 739.2 869 44.2
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 3.5e-181 639.8 387 79.1
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 4.3e-171 606.3 360 80.3
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.9e-159 567.0 389 72.5
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.2e-150 537.0 407 69.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.9e-147 527.7 565 51.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-147 527.3 472 61.4
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.0e-140 505.4 534 52.2
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.1e-101 374.8 251 74.9
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 6.1e-101 373.2 237 77.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 8.8e-100 369.4 256 71.1
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.0e-99 368.2 205 81.0
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.5e-86 324.7 238 68.1
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 3.1e-81 307.8 838 29.4
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 5.4e-81 307.0 235 70.2
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 4.0e-76 290.8 162 82.1
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.3e-70 271.2 150 82.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 4.9e-58 230.7 177 65.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-55 222.2 170 70.6
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 2.4e-49 201.8 261 49.0
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.0e-47 196.4 114 74.6
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 3.0e-47 194.9 147 72.8
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 6.2e-45 187.2 464 31.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.6e-40 171.0 90 80.0
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.3e-38 164.9 148 55.4
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.4e-36 159.5 104 77.9
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.4e-36 158.7 216 47.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.1e-30 139.8 131 58.8
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 9.6e-30 136.7 72 81.9
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 4.0e-28 131.3 77 74.0
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.5e-27 127.9 143 57.3
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.5e-27 127.9 143 57.3
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 6.4e-26 124.0 81 82.7
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 8.4e-26 123.6 96 66.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.6e-22 110.9 96 55.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.4e-19 101.7 71 67.6
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 3.5e-16 91.7 81 67.9
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.0e-15 90.1 58 79.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.1e-14 86.7 71 57.7
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 2.8e-13 82.0 67 71.6
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-11 75.1 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.7e-10 72.8 50 68.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-07 62.4 65 46.2


User provided reference genes

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