Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.8e-110 402.9 258 100.0
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.2e-109 400.2 258 99.2
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 6.8e-97 357.8 257 93.8
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 6.8e-97 357.8 257 93.8
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.4e-94 350.1 276 87.3
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 2.2e-71 273.1 287 65.9
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.0e-32 143.7 96 76.0
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 7.7e-32 141.7 97 76.3
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.7e-31 140.6 97 75.3
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 1.7e-31 140.6 97 75.3
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 2.2e-31 140.2 96 72.9
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 5.0e-31 139.0 96 71.9
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 1.9e-30 137.1 97 72.2
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 2.7e-29 133.3 96 67.7
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 7.9e-29 131.7 94 69.1
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 3.7e-26 122.9 96 66.7
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.2e-24 117.9 96 59.4
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.6e-24 117.5 96 60.4
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 2.6e-24 116.7 96 61.5
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 4.5e-24 115.9 96 65.6
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 4.5e-24 115.9 96 58.3
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 5.9e-24 115.5 96 58.3
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 7.7e-24 115.2 92 62.0
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.0e-23 114.8 123 53.7
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.0e-23 114.8 96 58.3
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.0e-23 114.8 96 58.3
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 2.9e-23 113.2 97 62.9
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 2.9e-23 113.2 96 58.3
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.9e-23 113.2 96 58.3
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.9e-23 113.2 92 62.0
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 5.0e-23 112.5 96 57.3
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 5.0e-23 112.5 96 57.3
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 6.5e-23 112.1 94 64.9
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 6.5e-23 112.1 96 56.2
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 8.5e-23 111.7 94 57.4
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.1e-22 111.3 78 74.4
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 1.1e-22 111.3 78 74.4
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.1e-22 111.3 96 57.3
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.5e-22 110.9 96 58.3
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.5e-22 110.9 96 56.2
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 2.5e-22 110.2 96 56.2
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.2e-22 109.8 96 55.2
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 4.2e-22 109.4 94 57.4
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 4.2e-22 109.4 96 58.3
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.5e-22 109.0 96 55.2
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 5.5e-22 109.0 96 56.2
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 9.4e-22 108.2 92 58.7
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 9.4e-22 108.2 96 55.2
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 9.4e-22 108.2 96 55.2
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 9.4e-22 108.2 96 56.2
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.2e-21 107.8 96 54.2
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.2e-21 107.8 96 56.2
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.2e-21 107.8 96 56.2
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.6e-21 107.5 96 56.2
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 1.6e-21 107.5 96 55.2
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.6e-21 107.5 96 54.2
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 2.1e-21 107.1 94 56.4
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 4.7e-21 105.9 94 56.4
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 1.0e-20 104.8 96 55.2
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.0e-20 104.8 96 55.2
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-20 104.0 96 53.1
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.8e-20 104.0 92 54.3
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 2.3e-20 103.6 95 54.7
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.3e-20 103.6 94 53.2
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.0e-20 103.2 96 53.1
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.0e-20 103.2 98 53.1
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 4.0e-20 102.8 96 53.1
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 4.0e-20 102.8 95 53.7
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 5.2e-20 102.4 94 55.3
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 5.2e-20 102.4 92 55.4
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 8.8e-20 101.7 95 52.6
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.5e-19 100.9 87 56.3
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 2.6e-19 100.1 92 53.3
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 4.4e-19 99.4 91 51.6
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 5.7e-19 99.0 94 52.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 5.7e-19 99.0 94 52.1
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 7.5e-19 98.6 94 52.1
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 1.3e-18 97.8 87 54.0
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.7e-18 96.3 94 53.2
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 4.8e-18 95.9 92 47.8
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 6.3e-18 95.5 77 61.0
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 8.2e-18 95.1 86 53.5
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.8e-17 94.0 87 52.9
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.8e-17 94.0 91 49.5
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.4e-17 93.6 76 61.8
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.1e-17 93.2 76 60.5
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 3.1e-17 93.2 91 49.5
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 5.3e-17 92.4 87 52.9
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 7.0e-17 92.0 83 54.2
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 7.0e-17 92.0 77 64.9
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.2e-16 91.3 92 45.7
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 2.7e-16 90.1 77 63.6
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.7e-16 90.1 76 60.5
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 1.0e-15 88.2 90 48.9
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 6.5e-15 85.5 97 48.5
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 6.5e-15 85.5 77 62.3
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 8.5e-15 85.1 85 48.2
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.5e-14 84.3 76 55.3
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 2.5e-14 83.6 86 52.3
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.0e-12 78.2 77 49.4
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.4e-12 77.8 86 51.2
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 6.8e-12 75.5 88 44.3
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.3e-10 71.2 88 44.3
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.3e-10 71.2 88 44.3
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 2.8e-10 70.1 92 43.5
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 6.3e-10 68.9 96 42.7
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 1.8e-09 67.4 81 48.1
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.8e-09 67.4 92 41.3
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.4e-09 67.0 91 45.1
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 5.4e-09 65.9 104 39.4
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.2e-08 64.7 78 48.7
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.2e-08 64.7 88 42.0
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.7e-08 62.0 63 47.6
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.5e-06 57.8 51 52.9
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 3.2e-06 56.6 85 37.6


User provided reference genes

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