Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p15900 Brassica napus HOM05D004230 ORTHO05D007976 1.3e-165 586.6 292 100.0
BolC7t42083H Brassica oleracea HOM05D004230 ORTHO05D007976 1.3e-162 576.6 292 99.0
BolC2t08058H Brassica oleracea HOM05D004230 ORTHO05D007976 3.9e-146 521.9 272 96.0
C02p19260 Brassica napus HOM05D004230 ORTHO05D007976 3.9e-114 415.6 240 90.0
A06p45730 Brassica napus HOM05D004230 ORTHO05D007976 6.6e-61 238.8 390 39.5
BcaB05g22709 Brassica carinata HOM05D004230 ORTHO05D007976 9.9e-57 224.9 370 37.3
BraA03t13046Z Brassica rapa HOM05D004230 ORTHO05D007976 1.3e-53 214.5 388 37.6
BraA06t26555Z Brassica rapa HOM05D004230 ORTHO05D007976 1.3e-53 214.5 376 37.5
BcaB07g32504 Brassica carinata HOM05D004230 ORTHO05D007976 3.0e-53 213.4 390 37.7
BraA10t43214Z Brassica rapa HOM05D004230 ORTHO05D007976 5.1e-53 212.6 152 64.5
C02p00010 Brassica napus HOM05D004230 ORTHO05D007976 1.1e-52 211.5 148 65.5
BcaB06g27526 Brassica carinata HOM05D004230 ORTHO05D007976 3.3e-52 209.9 342 38.6
BolC5t32761H Brassica oleracea HOM05D004230 ORTHO05D007976 2.8e-51 206.8 311 39.9
BcaC01g00380 Brassica carinata HOM05D004230 ORTHO05D007976 1.1e-50 204.9 110 93.6
BcaC05g28003 Brassica carinata HOM05D004230 ORTHO05D007976 1.4e-50 204.5 148 64.2
C05p40190 Brassica napus HOM05D004230 ORTHO05D007976 4.0e-50 203.0 148 63.5
AL7G44480 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 1.3e-48 198.0 154 62.3
BcaC03g18110 Brassica carinata HOM05D004230 ORTHO05D007976 7.1e-47 192.2 92 97.8
C07p28690 Brassica napus HOM05D004230 ORTHO05D007976 2.1e-46 190.7 228 48.7
BolC7t43407H Brassica oleracea HOM05D004230 ORTHO05D007976 2.1e-46 190.7 228 48.7
BolC2t12233H Brassica oleracea HOM05D004230 ORTHO05D007976 2.7e-46 190.3 128 78.1
BcaC06g34422 Brassica carinata HOM05D004230 ORTHO05D007976 2.3e-45 187.2 284 44.0
C03p63400 Brassica napus HOM05D030526 ORTHO05D028078 1.1e-44 184.9 156 69.2
BcaC09g49346 Brassica carinata HOM05D004230 ORTHO05D024011 1.4e-42 177.9 189 53.4
Sp4g02630 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.4e-42 177.9 327 37.0
BolC3t20148H Brassica oleracea HOM05D004230 ORTHO05D007976 2.2e-40 170.6 122 76.2
Sp3g29180 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.1e-38 164.1 242 42.6
CARHR102540 Cardamine hirsuta HOM05D004230 ORTHO05D007976 7.8e-38 162.2 120 63.3
C04p25730 Brassica napus HOM05D030526 ORTHO05D028078 1.9e-36 157.5 115 74.8
BolC4t24235H Brassica oleracea HOM05D030526 ORTHO05D028078 1.9e-36 157.5 115 74.8
C01p40550 Brassica napus HOM05D004230 ORTHO05D007976 1.8e-34 151.0 139 52.5
C07p48530 Brassica napus HOM05D004230 ORTHO05D007976 6.9e-34 149.1 146 52.7
BolC7t45361H Brassica oleracea HOM05D004230 ORTHO05D007976 6.9e-34 149.1 146 52.7
C01p22920 Brassica napus HOM05D004230 ORTHO05D007976 9.0e-34 148.7 139 51.1
BraA06t24715Z Brassica rapa HOM05D004230 ORTHO05D007976 1.2e-33 148.3 139 51.1
BraA06t26245Z Brassica rapa HOM05D004230 ORTHO05D007976 2.0e-33 147.5 148 48.6
C01p22890 Brassica napus HOM05D004230 ORTHO05D007976 3.4e-33 146.7 139 50.4
BcaC09g52278 Brassica carinata HOM05D004230 ORTHO05D007976 5.8e-33 146.0 138 50.7
C01p22970 Brassica napus HOM05D004230 ORTHO05D007976 5.8e-33 146.0 139 50.4
BolC1t02226H Brassica oleracea HOM05D004230 ORTHO05D007976 5.8e-33 146.0 138 50.7
AT5G36080 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 7.6e-33 145.6 171 50.3
BcaC09g49449 Brassica carinata HOM05D004230 ORTHO05D007976 9.9e-33 145.2 146 52.1
A06p33150 Brassica napus HOM05D004230 ORTHO05D007976 2.9e-32 143.7 148 47.3
C07p50550 Brassica napus HOM05D004230 ORTHO05D007976 2.9e-32 143.7 148 48.0
A03p38990 Brassica napus HOM05D004230 ORTHO05D007976 3.8e-32 143.3 337 32.9
BolC5t30511H Brassica oleracea HOM05D004230 ORTHO05D007976 4.9e-32 142.9 148 48.0
BcaB06g26529 Brassica carinata HOM05D004230 ORTHO05D007976 1.1e-31 141.7 148 49.3
BolC2t08696H Brassica oleracea HOM05D004230 ORTHO05D007976 1.1e-31 141.7 148 47.3
AL5G11160 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 2.4e-31 140.6 147 46.9
BraA09t39059Z Brassica rapa HOM05D004230 ORTHO05D007976 4.2e-31 139.8 147 49.0
BolC3t17847H Brassica oleracea HOM05D004230 ORTHO05D007976 9.3e-31 138.7 148 47.3
C08p27070 Brassica napus HOM05D004230 ORTHO05D007976 1.6e-30 137.9 120 52.5
Carub.0007s3043 Capsella rubella HOM05D004230 ORTHO05D007976 2.7e-30 137.1 134 50.0
A09p35300 Brassica napus HOM05D004230 ORTHO05D007976 1.0e-29 135.2 147 47.6
BolC4t28062H Brassica oleracea HOM05D004230 ORTHO05D007976 1.3e-29 134.8 139 48.9
Sp4g09110 Schrenkiella parvula HOM05D004230 ORTHO05D000563 2.3e-29 134.0 289 36.0
BcaC07g36911 Brassica carinata HOM05D004230 ORTHO05D007976 3.9e-29 133.3 145 46.9
C08p01070 Brassica napus HOM05D004230 ORTHO05D007976 1.5e-28 131.3 145 46.2
C01p41060 Brassica napus HOM05D004230 ORTHO05D021768 3.3e-28 130.2 97 72.2
BcaC03g16826 Brassica carinata HOM05D004230 ORTHO05D007976 5.6e-28 129.4 130 51.5
BolC8t46909H Brassica oleracea HOM05D004230 ORTHO05D007976 1.3e-27 128.3 198 39.4
Carub.0012s0003 Capsella rubella HOM05D004230 ORTHO05D007976 1.1e-26 125.2 163 42.3
BraA03t15403Z Brassica rapa HOM05D004230 ORTHO05D007976 1.4e-26 124.8 165 43.0
C06p14020 Brassica napus HOM05D004230 ORTHO05D007976 2.4e-26 124.0 322 29.8
A06p20520 Brassica napus HOM05D004230 ORTHO05D007976 6.9e-26 122.5 155 42.6
BolC6t36485H Brassica oleracea HOM05D004230 ORTHO05D007976 6.9e-26 122.5 328 30.2
BolC8t50322H Brassica oleracea HOM05D004230 ORTHO05D007976 1.2e-25 121.7 270 32.6
BcaB05g23135 Brassica carinata HOM05D004230 ORTHO05D007976 5.8e-25 119.4 98 56.1
C04p52580 Brassica napus HOM05D004230 ORTHO05D007976 5.8e-25 119.4 98 56.1
C01p36620 Brassica napus HOM05D004230 ORTHO05D007976 1.3e-24 118.2 97 56.7
BolC1t03622H Brassica oleracea HOM05D004230 ORTHO05D007976 1.3e-24 118.2 97 56.7
BraA01t02220Z Brassica rapa HOM05D004230 ORTHO05D007976 2.2e-24 117.5 302 29.5
C05p44100 Brassica napus HOM05D004230 ORTHO05D007976 2.9e-24 117.1 332 29.5
C03p27680 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-24 115.9 118 53.4
BcaC05g25838 Brassica carinata HOM05D004230 ORTHO05D007976 1.9e-23 114.4 98 52.0
BcaC05g28343 Brassica carinata HOM05D004230 ORTHO05D007976 1.9e-23 114.4 98 54.1
BcaC08g43996 Brassica carinata HOM05D004230 ORTHO05D007976 2.5e-23 114.0 98 52.0
BcaB01g00472 Brassica carinata HOM05D004230 ORTHO05D007976 5.5e-23 112.8 154 40.9
BcaC01g03708 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-22 111.7 98 50.0
CARHR145800 Cardamine hirsuta HOM05D004230 ORTHO05D007976 2.1e-22 110.9 169 41.4
BcaC03g15070 Brassica carinata HOM05D004230 ORTHO05D007976 2.7e-22 110.5 98 50.0
BcaC02g09042 Brassica carinata HOM05D004230 ORTHO05D007976 3.5e-22 110.2 98 49.0
C01p37620 Brassica napus HOM05D038736 ORTHO05D041661 1.0e-21 108.6 75 77.3
BcaC09g49284 Brassica carinata HOM05D004230 ORTHO05D007976 5.1e-21 106.3 97 49.5
BolC1t03727H Brassica oleracea HOM05D038736 ORTHO05D041661 1.1e-20 105.1 75 76.0
BolC5t33361H Brassica oleracea HOM05D004230 ORTHO05D007976 2.5e-20 104.0 118 50.8
BcaC02g08615 Brassica carinata HOM05D004230 ORTHO05D007976 3.3e-20 103.6 139 43.2
A01p37400 Brassica napus HOM05D004230 ORTHO05D021768 5.7e-20 102.8 88 59.1
Carub.0007s3045 Capsella rubella HOM05D004230 ORTHO05D007976 5.7e-20 102.8 114 47.4
AL8G23470 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 7.4e-20 102.4 128 46.9
BolC3t20706H Brassica oleracea HOM05D004230 ORTHO05D007976 7.4e-20 102.4 66 66.7
BraA04t16761Z Brassica rapa HOM05D037366 ORTHO05D042224 4.8e-19 99.8 172 37.2
A04p10960 Brassica napus HOM05D037366 ORTHO05D042224 6.2e-19 99.4 172 37.2
BolC2t12231H Brassica oleracea HOM05D004230 ORTHO05D018474 1.8e-18 97.8 107 56.1
Sp2g07590 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.5e-17 94.7 219 30.1
SpUn0171_0010 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.0e-17 94.4 147 36.7
AT1G35820 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 2.6e-17 94.0 287 28.9
Sp3g24280 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.6e-17 94.0 264 28.0
AT3G30520 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 4.5e-17 93.2 61 63.9
Carub.0007s3044 Capsella rubella HOM05D004230 ORTHO05D007976 5.8e-17 92.8 78 53.8
AT3G32904 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 3.8e-16 90.1 78 55.1
Carub.0007s3042 Capsella rubella HOM05D004230 ORTHO05D007976 3.8e-16 90.1 109 43.1
A01p32040 Brassica napus HOM05D004230 ORTHO05D021768 1.1e-15 88.6 66 69.7
CARHR034450 Cardamine hirsuta HOM05D004230 ORTHO05D007976 1.4e-15 88.2 81 50.6
BolC4t26773H Brassica oleracea HOM05D004230 ORTHO05D007976 2.5e-15 87.4 92 50.0
CARHR113870 Cardamine hirsuta HOM05D004230 ORTHO05D007976 4.2e-15 86.7 61 65.6
BolC4t25589H Brassica oleracea HOM05D004230 ORTHO05D007976 5.5e-15 86.3 96 43.8
BcaB05g23937 Brassica carinata HOM05D004230 ORTHO05D021768 9.3e-15 85.5 89 53.9
BraSC39t46184Z Brassica rapa HOM05D038736 ORTHO05D028078 1.0e-13 82.0 57 78.9
BcaB07g32180 Brassica carinata HOM05D004230 ORTHO05D007976 6.7e-13 79.3 145 35.9
Carub.0007s3014 Capsella rubella HOM05D004230 ORTHO05D007976 1.1e-12 78.6 46 67.4
C07p04500 Brassica napus HOM05D004230 ORTHO05D007976 1.9e-12 77.8 101 42.6
Sp5g19020 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.9e-12 77.8 93 45.2
BolC1t04061H Brassica oleracea HOM05D004230 ORTHO05D021768 4.3e-12 76.6 52 75.0
BraA01t03328Z Brassica rapa HOM05D004230 ORTHO05D024011 5.7e-12 76.3 33 97.0
BraA06t27442Z Brassica rapa HOM05D004230 ORTHO05D007976 9.7e-12 75.5 94 47.9
AT3G42870 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 3.7e-11 73.6 84 47.6
AL5G20550 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 4.8e-11 73.2 83 48.2
AT1G43720 Arabidopsis thaliana HOM05D004230 ORTHO05D018474 8.2e-11 72.4 89 46.1
C01p41050 Brassica napus HOM05D004230 ORTHO05D024011 8.2e-11 72.4 47 70.2
BolC1t04060H Brassica oleracea HOM05D004230 ORTHO05D024011 8.2e-11 72.4 47 70.2
BolC7t40845H Brassica oleracea HOM05D004230 ORTHO05D007976 8.2e-11 72.4 101 40.6
BcaC09g49286 Brassica carinata HOM05D004230 ORTHO05D007976 5.3e-10 69.7 57 57.9
A03p63250 Brassica napus HOM05D004230 ORTHO05D007976 9.0e-10 68.9 56 57.1
BcaB08g35653 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-09 68.6 32 90.6
THA.LOC104819338 Tarenaya hassleriana HOM05D004230 ORTHO05D014126 1.5e-09 68.2 172 27.9
BraA06t25864Z Brassica rapa HOM05D004230 ORTHO05D018474 7.7e-09 65.9 75 48.0
BraA06t25715Z Brassica rapa HOM05D004230 ORTHO05D007976 2.9e-08 63.9 43 62.8
C05p15560 Brassica napus HOM05D004230 ORTHO05D018474 1.9e-07 61.2 44 75.0
A10p29520 Brassica napus HOM05D012682 ORTHO05D014126 3.2e-07 60.5 95 32.6
C02p19270 Brassica napus HOM05D000034 ORTHO05D000037 3.2e-07 60.5 32 90.6
A05p10280 Brassica napus HOM05D012682 ORTHO05D014126 4.2e-07 60.1 95 31.6
BraA09t38540Z Brassica rapa HOM05D037366 ORTHO05D107879 4.2e-07 60.1 99 40.4
Carub.0005s0823 Capsella rubella HOM05D004230 ORTHO05D007976 4.2e-07 60.1 110 36.4
AL8G19300 Arabidopsis lyrata HOM05D004230 ORTHO05D000037 5.5e-07 59.7 127 33.1
BraA05t21003Z Brassica rapa HOM05D004230 ORTHO05D041249 5.5e-07 59.7 89 44.9
Nn1g08111 Nelumbo nucifera HOM05D000665 ORTHO05D000285 1.2e-06 58.5 109 27.5
A06p37980 Brassica napus HOM05D012682 ORTHO05D014126 2.1e-06 57.8 105 29.5
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 4.6e-06 56.6 66 42.4
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 4.6e-06 56.6 66 42.4
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 6.1e-06 56.2 66 42.4
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 7.9e-06 55.8 126 25.4


User provided reference genes

Program Settings