Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 3.7e-58 228.0 116 100.0
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 5.3e-57 224.2 116 99.1
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 7.7e-48 193.7 99 100.0
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 5.0e-39 164.5 104 86.5
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 4.2e-38 161.4 102 84.3
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 4.2e-38 161.4 102 84.3
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 1.0e-36 156.8 102 83.3
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 1.0e-36 156.8 102 83.3
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 1.0e-36 156.8 102 83.3
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 5.7e-35 151.0 103 78.6
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 1.7e-34 149.4 81 91.4
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 3.7e-34 148.3 101 80.2
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 1.8e-33 146.0 105 75.2
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 4.1e-33 144.8 105 75.2
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 1.5e-30 136.3 101 77.2
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 8.0e-29 130.6 99 72.7
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 3.0e-28 128.6 101 73.3
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 7.4e-27 124.0 104 68.3
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 7.2e-22 107.5 99 61.6
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 6.1e-13 77.8 87 42.5
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 1.4e-12 76.6 99 45.5
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 1.8e-12 76.3 99 45.5
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 5.2e-12 74.7 52 57.7
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 1.5e-11 73.2 78 50.0
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 2.0e-11 72.8 97 43.3
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 2.6e-11 72.4 99 44.4
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 3.4e-11 72.0 50 64.0
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 3.4e-11 72.0 96 43.8
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 3.4e-11 72.0 44 72.7
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 4.4e-11 71.6 102 43.1
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 4.4e-11 71.6 87 46.0
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 7.5e-11 70.9 52 55.8
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 9.8e-11 70.5 92 45.7
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 1.7e-10 69.7 87 49.4
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 2.2e-10 69.3 104 41.3
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 3.7e-10 68.6 103 43.7
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 4.8e-10 68.2 44 65.9
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 1.8e-09 66.2 94 41.5
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 2.4e-09 65.9 96 41.7
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 2.4e-09 65.9 94 43.6
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 2.4e-09 65.9 95 41.1
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 2.4e-09 65.9 100 38.0
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 4.1e-09 65.1 89 39.3
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 5.4e-09 64.7 90 41.1
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 5.4e-09 64.7 62 50.0
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 9.1e-09 63.9 95 43.2
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 9.1e-09 63.9 92 43.5
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 1.2e-08 63.5 108 39.8
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 1.2e-08 63.5 90 41.1
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.6e-08 63.2 94 39.4
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 2.0e-08 62.8 45 62.2
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 3.5e-08 62.0 82 41.5
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 3.5e-08 62.0 94 40.4
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 5.9e-08 61.2 102 37.3
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 5.9e-08 61.2 42 61.9
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 5.9e-08 61.2 42 61.9
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 7.7e-08 60.8 49 49.0
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 7.7e-08 60.8 92 37.0
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 7.7e-08 60.8 94 43.6
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 1.0e-07 60.5 90 38.9
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 1.0e-07 60.5 85 40.0
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 2.9e-07 58.9 108 40.7
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 3.8e-07 58.5 42 61.9
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 3.8e-07 58.5 42 59.5
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 5.0e-07 58.2 56 46.4
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 6.6e-07 57.8 44 59.1
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 8.6e-07 57.4 77 44.2
Mapoly0042s0091 Marchantia polymorpha HOM05D007852 ORTHO05D009916 8.6e-07 57.4 58 44.8
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 8.6e-07 57.4 42 57.1
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 8.6e-07 57.4 98 38.8
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 1.5e-06 56.6 109 41.3
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 1.5e-06 56.6 44 52.3
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 1.5e-06 56.6 52 51.9
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 1.5e-06 56.6 97 38.1
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 2.5e-06 55.8 90 36.7
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 3.3e-06 55.5 108 39.8
EL10Ac8g19876 Beta vulgaris HOM05D007852 ORTHO05D009916 4.2e-06 55.1 101 33.7
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 4.2e-06 55.1 90 38.9
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 9.5e-06 53.9 42 52.4
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 9.5e-06 53.9 94 38.3
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 9.5e-06 53.9 98 37.8


User provided reference genes

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