Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p15310 Brassica napus HOM05D013546 ORTHO05D014955 1.2e-43 179.5 93 100.0
C01p40840 Brassica napus HOM05D013546 ORTHO05D014955 3.9e-34 147.9 83 89.2
BolC1t03583H Brassica oleracea HOM05D013546 ORTHO05D014955 3.9e-34 147.9 83 89.2
A10p07820 Brassica napus HOM05D013546 ORTHO05D014955 2.3e-26 122.1 85 77.6
BraA03t10225Z Brassica rapa HOM05D013546 ORTHO05D014955 2.3e-26 122.1 85 77.6
C01p36250 Brassica napus HOM05D013546 ORTHO05D014955 8.6e-18 93.6 60 81.7
BolC1t04040H Brassica oleracea HOM05D013546 ORTHO05D014955 8.6e-18 93.6 60 81.7
CARHR076510 Cardamine hirsuta HOM05D000189 ORTHO05D006628 7.6e-14 80.5 76 57.9
BNapus_Darmor_BZH_scaffold_99p00030 Brassica napus HOM05D000189 ORTHO05D006628 2.9e-13 78.6 69 60.9
BolC1t05899H Brassica oleracea HOM05D000189 ORTHO05D006628 2.9e-13 78.6 69 60.9
Sp3g01540 Schrenkiella parvula HOM05D000189 ORTHO05D006628 2.9e-13 78.6 69 60.9
BcaB06g26615 Brassica carinata HOM05D013546 ORTHO05D014955 8.4e-13 77.0 60 63.3
AT3G02510 Arabidopsis thaliana HOM05D000189 ORTHO05D006628 1.1e-12 76.6 60 65.0
BNapus_Darmor_BZH_scaffold_122p00020 Brassica napus HOM05D000189 ORTHO05D006628 1.1e-12 76.6 69 59.4
Carub.0003s0162 Capsella rubella HOM05D000189 ORTHO05D006628 1.1e-12 76.6 60 65.0
Potri.017G113200 Populus trichocarpa HOM05D000189 ORTHO05D006628 1.4e-12 76.3 76 57.9
THA.LOC104820953 Tarenaya hassleriana HOM05D000189 ORTHO05D006628 1.4e-12 76.3 69 59.4
Aa31LG11G13570 Aethionema arabicum HOM05D000189 ORTHO05D006628 1.9e-12 75.9 69 59.4
CARHR197270 Cardamine hirsuta HOM05D000189 ORTHO05D006628 2.4e-12 75.5 69 58.0
AL3G11870 Arabidopsis lyrata HOM05D000189 ORTHO05D006628 3.2e-12 75.1 60 63.3
BcaB08g36882 Brassica carinata HOM05D000189 ORTHO05D006628 3.2e-12 75.1 69 58.0
BcaC09g47706 Brassica carinata HOM05D000189 ORTHO05D006628 3.2e-12 75.1 69 59.4
Thhalv10013742m.g Eutrema salsugineum HOM05D000189 ORTHO05D006628 3.2e-12 75.1 69 59.4
CANSAT64G0905 Cannabis sativa HOM05D000189 ORTHO05D006628 4.2e-12 74.7 69 58.0
Potri.004G101800 Populus trichocarpa HOM05D000189 ORTHO05D006628 4.2e-12 74.7 69 56.5
A10p23010 Brassica napus HOM05D000189 ORTHO05D006628 5.4e-12 74.3 69 58.0
BolC9t58945H Brassica oleracea HOM05D000189 ORTHO05D006628 5.4e-12 74.3 69 58.0
BraA10t44370Z Brassica rapa HOM05D000189 ORTHO05D006628 5.4e-12 74.3 69 58.0
Prupe.3G239200 Prunus persica HOM05D000189 ORTHO05D006628 5.4e-12 74.3 69 59.4
Cpa.g.sc179.18 Carica papaya HOM05D000189 ORTHO05D006628 7.1e-12 73.9 69 58.0
Ciclev10011926m.g Citrus clementina HOM05D000189 ORTHO05D006628 7.1e-12 73.9 69 58.0
MD07G1096100 Malus domestica HOM05D000189 ORTHO05D006628 7.1e-12 73.9 69 58.0
arahy.Tifrunner.gnm1.ann1.50M490 Arachis hypogaea HOM05D000189 ORTHO05D006628 9.3e-12 73.6 78 50.0
Thecc.04G136800 Theobroma cacao HOM05D000189 ORTHO05D006628 9.3e-12 73.6 69 58.0
TWI74G0720 Tripterygium wilfordii HOM05D000189 ORTHO05D006628 9.3e-12 73.6 69 56.5
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.2e-11 73.2 69 58.0
Sed0002805 Sechium edule HOM05D000189 ORTHO05D006628 1.2e-11 73.2 69 58.0
Sed0006396 Sechium edule HOM05D000189 ORTHO05D006628 1.2e-11 73.2 69 58.0
Aa31LG5G13010 Aethionema arabicum HOM05D000189 ORTHO05D006628 1.6e-11 72.8 60 63.3
Carub.0006s1423 Capsella rubella HOM05D000189 ORTHO05D006628 1.6e-11 72.8 69 56.5
MELO3C022092.2 Cucumis melo HOM05D000189 ORTHO05D006628 1.6e-11 72.8 69 58.0
Gohir.A11G162700 Gossypium hirsutum HOM05D000189 ORTHO05D006628 1.6e-11 72.8 69 58.0
Gohir.D11G168900 Gossypium hirsutum HOM05D000189 ORTHO05D006628 1.6e-11 72.8 69 58.0
Gorai.007G180500 Gossypium raimondii HOM05D000189 ORTHO05D006628 1.6e-11 72.8 69 58.0
Cfa007941 Carpinus fangiana HOM05D000189 ORTHO05D006628 2.1e-11 72.4 60 61.7
CsaV3_5G039170 Cucumis sativus L. HOM05D000189 ORTHO05D006628 2.1e-11 72.4 69 56.5
PGR042G3999 Punica granatum HOM05D000189 ORTHO05D006628 2.1e-11 72.4 62 59.7
QL02p051539 Quercus lobata HOM05D000189 ORTHO05D006628 2.1e-11 72.4 60 63.3
Sp6g28090 Schrenkiella parvula HOM05D000189 ORTHO05D006628 2.1e-11 72.4 60 61.7
Atru.chr8.861 Acer truncatum HOM05D000189 ORTHO05D006628 3.5e-11 71.6 76 53.9
AL6G26920 Arabidopsis lyrata HOM05D000189 ORTHO05D006628 3.5e-11 71.6 60 60.0
AT5G16040 Arabidopsis thaliana HOM05D000189 ORTHO05D006628 3.5e-11 71.6 60 60.0
BcaC02g08415 Brassica carinata HOM05D013546 ORTHO05D014955 3.5e-11 71.6 69 55.1
MD17G1074800 Malus domestica HOM05D000189 ORTHO05D006628 3.5e-11 71.6 69 56.5
TWI74G1546 Tripterygium wilfordii HOM05D000189 ORTHO05D006628 3.5e-11 71.6 69 55.1
BcaC04g18913 Brassica carinata HOM05D000189 ORTHO05D006628 4.6e-11 71.2 69 56.5
C09p60980 Brassica napus HOM05D000189 ORTHO05D006628 4.6e-11 71.2 69 56.5
arahy.Tifrunner.gnm1.ann1.H2M9W7 Arachis hypogaea HOM05D000189 ORTHO05D006628 6.0e-11 70.9 69 53.6
Eucgr.J01476 Eucalyptus grandis HOM05D000189 ORTHO05D006628 6.0e-11 70.9 69 55.1
Lj2g0014953 Lotus japonicus HOM05D000189 ORTHO05D006628 6.0e-11 70.9 69 56.5
TPR.G32472 Trifolium pratense HOM05D000189 ORTHO05D006628 6.0e-11 70.9 69 55.1
CiPaw.03G060200 Carya illinoinensis HOM05D000189 ORTHO05D006628 7.8e-11 70.5 60 61.7
Phvul.004G064300 Phaseolus vulgaris HOM05D000189 ORTHO05D006628 7.8e-11 70.5 69 55.1
VMungo0464G0226 Vigna mungo HOM05D000189 ORTHO05D006628 7.8e-11 70.5 69 55.1
Ca_13738_v3 Cicer arietinum L. HOM05D000189 ORTHO05D006628 1.0e-10 70.1 69 55.1
FAN14G4610 Fragaria x ananassa HOM05D000298 ORTHO05D006628 1.0e-10 70.1 62 58.1
RcHm_v2.0_Chr2g0163071 Rosa chinensis HOM05D000189 ORTHO05D006628 1.0e-10 70.1 69 55.1
Psat1g078920 Pisum sativum HOM05D000189 ORTHO05D006628 1.3e-10 69.7 69 53.6
FvH4_6g45310 Fragaria vesca HOM05D000189 ORTHO05D006628 1.7e-10 69.3 60 60.0
FAN05G4849 Fragaria x ananassa HOM05D000298 ORTHO05D000553 1.7e-10 69.3 60 60.0
Medtr0024s0070 Medicago truncatula HOM05D000189 ORTHO05D006628 1.7e-10 69.3 69 55.1
DCAR_017208 Daucus carota HOM05D000189 ORTHO05D006628 5.1e-10 67.8 69 56.5
Glyma.19G046100 Glycine max HOM05D000189 ORTHO05D006628 5.1e-10 67.8 60 58.3
PSO063G6465 Papaver somniferum HOM05D000189 ORTHO05D006628 1.5e-09 66.2 69 56.5
PSO782G3998 Papaver somniferum HOM05D000189 ORTHO05D006628 1.5e-09 66.2 69 56.5
HPP92_026956 Vanilla planifolia HOM05D000189 ORTHO05D006628 1.5e-09 66.2 69 55.1
Lalb_Chr02g0158281 Lupinus albus HOM05D000189 ORTHO05D006628 1.9e-09 65.9 60 56.7
Peaxi162Scf01327g00132 Petunia axillaris HOM05D000189 ORTHO05D006628 1.9e-09 65.9 69 55.1
Aqoxy3G03932 Aquilegia oxysepala HOM05D000189 ORTHO05D006628 2.5e-09 65.5 69 56.5
Nitab4.5_0002288g0060 Nicotiana tabacum HOM05D000189 ORTHO05D006628 2.5e-09 65.5 69 55.1
Sc11g0008230 Simmondsia chinensis HOM05D000189 ORTHO05D006628 2.5e-09 65.5 69 53.6
Solyc02g085780.3 Solanum lycopersicum HOM05D000189 ORTHO05D006628 2.5e-09 65.5 69 53.6
Sopen02g030470 Solanum pennellii HOM05D000189 ORTHO05D006628 2.5e-09 65.5 69 53.6
PGSC0003DMG401012656 Solanum tuberosum HOM05D000189 ORTHO05D006628 2.5e-09 65.5 69 53.6
unitig_60.g25410 Utricularia gibba HOM05D000189 ORTHO05D006628 2.5e-09 65.5 69 53.6
MSTRG.23563 Avicennia marina HOM05D000189 ORTHO05D006628 3.3e-09 65.1 69 55.1
CAN.G358.140 Capsicum annuum HOM05D000189 ORTHO05D006628 3.3e-09 65.1 69 55.1
Nitab4.5_0004118g0130 Nicotiana tabacum HOM05D000189 ORTHO05D006628 3.3e-09 65.1 69 53.6
Rhsim10G0063200 Rhododendron simsii HOM05D000189 ORTHO05D006628 3.3e-09 65.1 69 56.5
SHI28229 Sapria himalayana HOM05D000189 ORTHO05D006628 3.3e-09 65.1 67 52.2
Cc07_g08940 Coffea canephora HOM05D000189 ORTHO05D006628 4.3e-09 64.7 69 56.5
Dinv33930 Davidia involucrata HOM05D000189 ORTHO05D006628 4.3e-09 64.7 69 56.5
Lj2A446T44 Lonicera japonica HOM05D000189 ORTHO05D006628 4.3e-09 64.7 69 56.5
Nn3g17776 Nelumbo nucifera HOM05D000189 ORTHO05D006628 4.3e-09 64.7 69 55.1
Ah.16g101890 Amaranthus hybridus HOM05D000298 ORTHO05D006628 5.6e-09 64.3 69 52.2
Nn4g23772 Nelumbo nucifera HOM05D000189 ORTHO05D006628 5.6e-09 64.3 69 55.1
SGA_v2.0_scaffold33G13475 Striga asiatica HOM05D000189 ORTHO05D006628 5.6e-09 64.3 69 55.1
CSS0046451 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D006628 7.3e-09 63.9 69 55.1
COL.COLO4_16185 Corchorus olitorius HOM05D000189 ORTHO05D006628 7.3e-09 63.9 84 48.8
Mapoly0030s0128 Marchantia polymorpha HOM05D000189 ORTHO05D006628 7.3e-09 63.9 69 53.6
vmacro05570 Vaccinium macrocarpon HOM05D000189 ORTHO05D006628 9.6e-09 63.5 69 55.1
GSVIVG01031071001 Vitis vinifera HOM05D000189 ORTHO05D006628 9.6e-09 63.5 69 53.6
Actinidia36311 Actinidia chinensis HOM05D000189 ORTHO05D006628 1.3e-08 63.2 69 55.1
CDE05G0975 Ceratophyllum demersum HOM05D000298 ORTHO05D006628 1.3e-08 63.2 67 55.2
AUR62008975 Chenopodium quinoa HOM05D000189 ORTHO05D006628 1.3e-08 63.2 67 53.7
AUR62014530 Chenopodium quinoa HOM05D000189 ORTHO05D006628 1.3e-08 63.2 67 53.7
ATR0097G025 Amborella trichopoda HOM05D000189 ORTHO05D006628 1.6e-08 62.8 69 53.6
CSS0021672 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D006628 1.6e-08 62.8 69 55.1
Dinv34843 Davidia involucrata HOM05D000189 ORTHO05D006628 1.6e-08 62.8 60 60.0
Hma1.2p1_0136F.1_g062140 Hydrangea macrophylla HOM05D000189 ORTHO05D006628 1.6e-08 62.8 69 52.2
Migut.H00204 Erythranthe guttata HOM05D000189 ORTHO05D006628 2.1e-08 62.4 61 60.7
TAR371G0089 Trochodendron aralioides HOM05D000189 ORTHO05D006628 4.8e-08 61.2 60 58.3
EL10Ac2g04596 Beta vulgaris HOM05D000189 ORTHO05D006628 6.2e-08 60.8 58 56.9
CBR_g30780 Chara braunii HOM05D000189 ORTHO05D006628 6.2e-08 60.8 63 52.4
HanXRQChr14g0440981 Helianthus annuus HOM05D000189 ORTHO05D006628 6.2e-08 60.8 59 55.9
Lsat_1_v5_gn_2_79660 Lactuca sativa HOM05D000189 ORTHO05D006628 6.2e-08 60.8 59 55.9
Oeu030781.1 Olea europaea HOM05D000189 ORTHO05D006628 6.2e-08 60.8 60 58.3
Os08g0430700 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D006628 6.2e-08 60.8 60 56.7
SalBow3G2679 Salvia bowleyana HOM05D000189 ORTHO05D006628 6.2e-08 60.8 60 60.0
CDE05G3347 Ceratophyllum demersum HOM05D000189 ORTHO05D006628 8.1e-08 60.5 67 52.2
Hund13729 Selenicereus undatus HOM05D000189 ORTHO05D006628 8.1e-08 60.5 60 53.3
ECA238G3704 Erigeron canadensis HOM05D000189 ORTHO05D006628 1.8e-07 59.3 59 55.9
MD09G1085900 Malus domestica HOM05D000189 ORTHO05D006628 3.1e-07 58.5 86 43.0
RcHm_v2.0_Chr3g0455021 Rosa chinensis HOM05D005595 ORTHO05D006628 5.3e-07 57.8 74 48.6
Zm00001eb179510 Zea mays HOM05D000189 ORTHO05D006628 1.5e-06 56.2 60 55.0
SMO271G0115 Selaginella moellendorffii HOM05D000189 ORTHO05D006628 2.0e-06 55.8 69 47.8
Sabra04G0078500 Salix brachista HOM05D000189 ORTHO05D006628 4.4e-06 54.7 112 33.0


User provided reference genes

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