Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 7.9e-78 293.9 168 100.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.5e-76 289.7 168 97.6
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 2.9e-72 275.4 169 92.3
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.0e-61 238.8 169 85.8
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.7e-56 223.0 181 78.5
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 6.3e-51 204.5 177 76.3
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 3.1e-50 202.2 179 70.9
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 3.1e-50 202.2 178 69.1
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 2.0e-49 199.5 179 69.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 7.7e-49 197.6 178 68.0
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 7.7e-49 197.6 178 68.0
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.0e-48 197.2 182 71.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.4e-47 193.4 179 70.4
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.6e-41 173.3 178 61.8
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 4.5e-41 171.8 177 65.5
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 3.8e-40 168.7 169 68.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.5e-39 166.8 172 65.7
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.8e-24 115.5 172 51.2
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 8.0e-22 107.8 100 69.0
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.0e-21 107.5 93 71.0
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 1.0e-21 107.5 102 73.5
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.4e-21 107.1 110 64.5
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 5.2e-21 105.1 93 66.7
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 5.2e-21 105.1 93 66.7
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 6.8e-21 104.8 110 63.6
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 6.8e-21 104.8 110 63.6
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 6.8e-21 104.8 110 63.6
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.8e-21 104.8 101 70.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.5e-20 103.6 117 56.4
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.0e-20 103.2 120 60.8
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.6e-20 102.8 122 61.5
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 4.4e-20 102.1 119 57.1
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 5.7e-20 101.7 110 62.7
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 9.8e-20 100.9 99 64.6
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.1e-18 97.4 96 71.9
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.8e-18 96.7 99 63.6
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.5e-17 92.4 143 48.3
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 4.5e-17 92.0 96 64.6
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 5.9e-17 91.7 109 60.6
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.3e-16 90.5 105 61.9
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.7e-16 90.1 96 63.5
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 2.3e-16 89.7 94 63.8
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.9e-16 89.4 118 55.9
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.9e-16 89.4 93 61.3
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.9e-16 89.4 95 63.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.9e-16 89.4 109 59.6
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.9e-16 89.4 96 63.5
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 3.8e-16 89.0 82 73.2
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 3.8e-16 89.0 109 59.6
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 5.0e-16 88.6 115 53.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 6.6e-16 88.2 107 59.8
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 6.6e-16 88.2 118 55.1
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 6.6e-16 88.2 109 59.6
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.1e-15 87.4 118 54.2
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 1.5e-15 87.0 94 61.7
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.5e-15 87.0 107 58.9
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.5e-15 87.0 107 58.9
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.5e-15 87.0 107 58.9
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.5e-15 87.0 91 63.7
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.5e-15 87.0 118 55.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.5e-15 87.0 95 61.1
Aa31LG6G11730 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.5e-15 86.3 178 43.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 2.5e-15 86.3 104 58.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-15 86.3 125 52.8
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 2.5e-15 86.3 95 65.3
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 3.3e-15 85.9 119 54.6
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.3e-15 85.9 109 58.7
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 3.3e-15 85.9 94 64.9
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.3e-15 85.5 86 65.1
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 7.3e-15 84.7 86 67.4
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 7.3e-15 84.7 94 61.7
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 7.3e-15 84.7 94 66.0
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 9.5e-15 84.3 92 63.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.2e-14 84.0 92 64.1
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.2e-14 84.0 109 57.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.2e-14 84.0 86 65.1
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.6e-14 83.6 92 63.0
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.6e-14 83.6 86 55.8
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 2.1e-14 83.2 96 62.5
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.8e-14 82.8 95 60.0
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.6e-14 82.4 96 62.5
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 3.6e-14 82.4 125 52.8
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.6e-14 82.4 88 64.8
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.7e-14 82.0 118 54.2
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 6.1e-14 81.6 109 56.9
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.0e-14 81.3 96 60.4
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 8.0e-14 81.3 139 49.6
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 8.0e-14 81.3 100 62.0
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.0e-13 80.9 86 64.0
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.0e-13 80.9 86 64.0
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.0e-13 80.9 118 53.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.0e-13 80.9 121 54.5
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.0e-13 80.9 134 50.7
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.0e-13 80.9 96 58.3
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.4e-13 80.5 96 60.4
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.4e-13 80.5 105 58.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.8e-13 80.1 96 60.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.8e-13 80.1 121 52.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.3e-13 79.7 96 55.2
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 3.0e-13 79.3 103 59.2
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.0e-13 79.3 92 60.9
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 3.0e-13 79.3 122 50.0
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.0e-13 79.0 84 67.9
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 4.0e-13 79.0 92 64.1
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.0e-13 79.0 93 60.2
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.0e-13 79.0 86 62.8
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 5.2e-13 78.6 94 62.8
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.2e-12 77.4 109 52.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.5e-12 77.0 100 60.0
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.5e-12 77.0 92 62.0
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.5e-12 77.0 102 54.9
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.0e-12 76.6 116 52.6
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 2.0e-12 76.6 84 65.5
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 2.0e-12 76.6 84 65.5
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 4.4e-12 75.5 123 54.5
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 4.4e-12 75.5 136 48.5
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.7e-12 75.1 87 59.8
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 5.7e-12 75.1 57 64.9
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 9.8e-12 74.3 112 50.9
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.9e-11 72.8 80 62.5
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.9e-11 72.8 112 51.8
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 3.7e-11 72.4 92 62.0
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.9e-11 72.0 90 51.1
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.9e-11 72.0 112 51.8
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 4.9e-11 72.0 96 58.3
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 6.4e-11 71.6 121 42.1
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.4e-10 69.7 102 52.0
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 4.1e-10 68.9 98 57.1
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 4.1e-10 68.9 96 53.1
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 4.1e-10 68.9 98 55.1
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 5.4e-10 68.6 129 48.1
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 5.4e-10 68.6 97 54.6
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 7.0e-10 68.2 109 52.3
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.0e-09 66.6 86 59.3
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.7e-09 66.2 87 59.8
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 2.7e-09 66.2 79 59.5
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 3.5e-09 65.9 56 73.2
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 4.6e-09 65.5 87 62.1
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.0e-08 64.3 81 60.5
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.7e-08 63.5 99 56.6
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.0e-08 62.8 57 77.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.0e-08 62.0 128 44.5
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 6.6e-08 61.6 86 55.8
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 8.6e-08 61.2 64 54.7
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 2.5e-07 59.7 98 51.0
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.6e-07 58.5 57 73.7
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 1.2e-06 57.4 120 44.2
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 1.2e-06 57.4 120 44.2
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.2e-06 57.4 57 57.9
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 1.2e-06 57.4 119 44.5
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.6e-06 57.0 56 60.7
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.6e-06 57.0 80 55.0
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 2.1e-06 56.6 76 56.6
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 4.7e-06 55.5 120 44.2
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.2e-06 55.1 57 71.9
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 8.0e-06 54.7 93 46.2


User provided reference genes

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