Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.6e-88 329.3 159 100.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 6.7e-87 323.9 159 98.1
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 7.4e-78 293.9 145 97.2
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 1.0e-71 273.5 135 97.0
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-59 232.6 118 95.8
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.0e-47 193.7 104 88.5
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-47 193.7 104 88.5
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.8e-47 193.0 104 88.5
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 5.2e-47 191.4 104 87.5
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-46 189.5 104 86.5
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.0e-46 189.5 104 86.5
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 1.9e-41 172.9 101 82.2
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 7.3e-41 171.0 119 68.9
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 7.3e-41 171.0 104 78.8
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.5e-41 170.6 119 69.7
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.2e-38 163.7 119 67.2
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.4e-36 154.8 135 57.8
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 9.2e-36 154.1 104 71.2
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.7e-35 152.5 101 71.3
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 3.0e-34 149.1 80 90.0
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.5e-33 146.7 108 68.5
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 3.3e-33 145.6 116 62.9
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 5.6e-33 144.8 101 69.3
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 9.5e-33 144.1 101 68.3
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 2.8e-32 142.5 101 67.3
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 3.6e-32 142.1 101 67.3
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 3.6e-32 142.1 101 67.3
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 6.2e-32 141.4 101 65.3
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-31 140.6 101 66.3
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.1e-31 139.0 101 68.3
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 4.0e-31 138.7 101 64.4
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 4.0e-31 138.7 101 64.4
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 5.2e-31 138.3 114 63.2
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.5e-30 136.7 97 69.1
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-30 136.3 101 63.4
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-30 136.3 101 63.4
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.1e-28 130.6 101 64.4
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 2.7e-27 125.9 113 53.1
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 4.6e-27 125.2 119 53.8
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 4.6e-27 125.2 119 53.8
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 4.6e-27 125.2 113 55.8
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.0e-26 124.0 106 57.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.3e-26 122.9 122 48.4
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 6.6e-26 121.3 109 53.2
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 8.6e-26 120.9 113 53.1
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 8.6e-26 120.9 109 53.2
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.1e-25 120.6 120 52.5
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.5e-25 120.2 108 51.9
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 2.5e-25 119.4 101 57.4
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.5e-25 119.4 68 86.8
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 2.5e-25 119.4 104 54.8
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.3e-25 119.0 102 52.9
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 3.3e-25 119.0 101 56.4
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.3e-25 118.6 101 55.4
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.3e-25 118.6 101 55.4
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 5.6e-25 118.2 101 56.4
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.1e-24 116.3 100 52.0
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 2.8e-24 115.9 102 52.9
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.6e-24 115.5 108 54.6
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 3.6e-24 115.5 119 47.9
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 4.7e-24 115.2 99 53.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 6.2e-24 114.8 115 48.7
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 6.2e-24 114.8 101 52.5
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 8.1e-24 114.4 101 52.5
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.4e-23 113.6 101 53.5
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.8e-23 113.2 102 50.0
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.8e-23 113.2 108 50.9
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 2.4e-23 112.8 101 51.5
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 2.4e-23 112.8 101 51.5
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 4.0e-23 112.1 101 52.5
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 6.8e-23 111.3 101 52.5
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 6.8e-23 111.3 101 50.5
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.8e-23 111.3 108 51.9
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.8e-23 111.3 101 50.5
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 8.9e-23 110.9 101 50.5
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.2e-22 110.5 102 51.0
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.2e-22 110.5 101 50.5
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.2e-22 110.5 101 50.5
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.5e-22 110.2 107 49.5
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.5e-22 110.2 100 49.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.0e-22 109.8 116 43.1
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 2.6e-22 109.4 102 51.0
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 3.4e-22 109.0 101 51.5
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 4.4e-22 108.6 112 45.5
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.4e-22 108.6 108 49.1
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 5.8e-22 108.2 101 50.5
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 9.9e-22 107.5 110 47.3
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.3e-21 107.1 122 47.5
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.3e-21 107.1 122 47.5
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.3e-21 107.1 101 50.5
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.3e-21 107.1 100 50.0
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.7e-21 106.7 108 46.3
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.2e-21 106.3 108 46.3
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.2e-21 106.3 104 50.0
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.9e-21 105.9 101 48.5
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 3.8e-21 105.5 101 45.5
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 4.9e-21 105.1 101 50.5
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 4.9e-21 105.1 114 43.9
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.1e-20 104.0 108 46.3
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.4e-20 103.6 104 47.1
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.4e-20 103.6 104 47.1
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.4e-20 103.6 101 47.5
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 4.2e-20 102.1 108 48.1
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 7.1e-20 101.3 112 42.9
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.2e-19 100.5 102 45.1
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.2e-19 100.5 116 44.0
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.6e-19 100.1 112 42.9
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.6e-19 100.1 100 49.0
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 1.6e-19 100.1 116 44.0
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.6e-19 100.1 104 44.2
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.1e-19 99.8 113 45.1
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.1e-19 99.8 108 46.3
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 3.5e-19 99.0 100 47.0
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.5e-19 99.0 104 43.3
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.5e-19 99.0 104 45.2
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 3.5e-19 99.0 101 44.6
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 6.0e-19 98.2 116 43.1
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 6.0e-19 98.2 88 52.3
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 7.8e-19 97.8 104 44.2
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.8e-19 97.8 102 46.1
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.0e-18 97.4 104 45.2
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.0e-18 97.4 101 43.6
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.3e-18 97.1 110 46.4
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.7e-18 96.7 102 45.1
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 3.0e-18 95.9 101 46.5
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 3.9e-18 95.5 102 45.1
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 5.1e-18 95.1 102 46.1
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.1e-18 95.1 102 44.1
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 6.6e-18 94.7 101 43.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 6.6e-18 94.7 121 43.8
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 8.7e-18 94.4 102 44.1
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.5e-17 93.6 101 42.6
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.5e-17 93.6 104 42.3
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.5e-17 93.6 101 42.6
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 3.3e-17 92.4 104 42.3
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.6e-16 90.1 100 46.0
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.8e-16 89.4 101 40.6
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 3.6e-16 89.0 102 42.2
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 3.6e-16 89.0 101 44.6
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 6.2e-16 88.2 101 41.6
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 3.1e-15 85.9 63 66.7
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 5.3e-15 85.1 101 42.6
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 5.3e-15 85.1 102 41.2
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.5e-14 83.6 103 43.7
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.5e-14 83.6 101 42.6
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 5.8e-14 81.6 101 45.5
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 5.8e-14 81.6 100 43.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 9.9e-14 80.9 89 42.7
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.7e-13 80.1 109 38.5
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.8e-13 79.0 100 39.0
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.9e-13 78.6 95 42.1
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.9e-13 78.6 109 34.9
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 6.4e-13 78.2 68 54.4
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.4e-12 77.0 109 37.6
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.4e-12 76.3 101 37.6
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.4e-12 75.1 78 46.2
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.0e-10 70.9 100 39.0
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 2.3e-10 69.7 104 34.6
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-09 67.4 71 46.5
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 4.3e-09 65.5 100 37.0
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.8e-08 62.0 55 52.7
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 4.0e-07 58.9 100 37.0
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 2.6e-06 56.2 101 38.6


User provided reference genes

Program Settings