Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 3.6e-74 281.6 149 100.0
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 4.4e-48 194.9 115 92.2
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 8.6e-36 154.1 95 87.4
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.7e-29 132.5 159 55.3
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 3.5e-29 132.1 165 54.5
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 6.0e-29 131.3 163 53.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.3e-28 129.4 170 51.8
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-27 127.1 169 53.3
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-26 123.6 170 51.2
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.8e-23 112.1 164 45.1
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 4.9e-23 111.7 165 46.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 6.4e-23 111.3 164 44.5
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.1e-22 110.5 160 46.2
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.1e-22 107.8 163 46.6
BraA07t28705Z Brassica rapa HOM05D003503 ORTHO05D003885 2.1e-21 106.3 74 78.4
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.7e-21 105.9 154 46.8
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.5e-21 105.5 165 49.1
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 8.7e-20 100.9 156 46.8
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 4.8e-18 95.1 154 44.2
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 4.8e-18 95.1 154 44.2
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 4.8e-18 95.1 154 44.2
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.1e-17 94.0 164 40.9
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-17 93.2 156 41.7
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.8e-17 93.2 156 41.7
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.4e-17 92.8 155 41.9
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 4.0e-17 92.0 164 39.6
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 5.3e-17 91.7 164 39.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 6.9e-17 91.3 164 40.9
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 9.0e-17 90.9 164 40.9
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 9.9e-16 87.4 169 43.8
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.9e-15 85.9 162 37.7
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.9e-15 85.9 164 40.9
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 1.9e-14 83.2 77 62.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.4e-14 81.6 167 35.3
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.6e-13 80.1 164 36.0
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 7.9e-13 77.8 165 35.8
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.8e-12 76.6 167 38.3
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 3.0e-12 75.9 162 36.4
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.0e-12 75.9 162 36.4
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.9e-12 75.5 162 35.2
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 3.9e-12 75.5 164 35.4
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.1e-12 75.1 171 33.9
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 6.7e-12 74.7 167 35.3
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-11 73.9 149 39.6
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.5e-11 73.6 167 35.3
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.5e-11 73.6 165 35.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.9e-11 73.2 167 36.5
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.9e-11 73.2 166 37.3
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.9e-11 73.2 166 34.3
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.9e-11 73.2 166 34.3
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.9e-11 73.2 156 34.6
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.5e-11 72.8 163 35.6
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 3.3e-11 72.4 165 35.8
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 4.3e-11 72.0 121 43.8
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 4.3e-11 72.0 166 34.3
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 5.6e-11 71.6 164 37.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 7.4e-11 71.2 146 37.7
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 7.4e-11 71.2 152 36.8
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 7.4e-11 71.2 147 36.7
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 9.6e-11 70.9 159 36.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.3e-10 70.5 162 34.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-10 70.1 157 39.5
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.6e-10 70.1 169 36.7
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.6e-10 70.1 168 35.7
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.6e-10 70.1 165 33.3
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.8e-10 69.3 171 34.5
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.8e-10 69.3 157 38.2
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 3.7e-10 68.9 162 38.3
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-10 68.9 157 38.9
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-10 68.9 162 38.3
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 4.8e-10 68.6 166 36.1
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.8e-10 68.6 174 35.1
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.2e-10 68.2 157 38.9
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 8.1e-10 67.8 157 34.4
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 8.1e-10 67.8 157 38.2
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-09 67.4 157 36.9
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-09 67.4 157 36.9
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.4e-09 67.0 163 35.6
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-09 67.0 157 38.2
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-09 67.0 157 38.2
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.4e-09 67.0 168 32.7
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.8e-09 66.6 167 31.7
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.8e-09 66.6 174 34.5
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.8e-09 66.6 164 32.3
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.8e-09 66.6 153 37.3
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.4e-09 66.2 164 32.9
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-09 65.9 155 37.4
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.1e-09 65.9 166 33.1
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.0e-09 65.5 162 32.7
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 5.3e-09 65.1 187 32.1
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 5.3e-09 65.1 166 31.3
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 6.9e-09 64.7 153 33.3
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 6.9e-09 64.7 166 31.3
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 9.0e-09 64.3 165 36.4
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.2e-08 63.9 158 32.9
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.5e-08 63.5 163 34.4
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.0e-08 63.2 168 32.1
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.0e-08 63.2 172 32.6
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.6e-08 62.8 166 32.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.6e-08 62.8 159 35.8
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.6e-08 62.8 168 31.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 3.4e-08 62.4 165 33.9
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.4e-08 62.4 153 35.3
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 3.4e-08 62.4 159 35.2
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.5e-08 62.0 165 32.7
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 4.5e-08 62.0 161 34.8
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.5e-08 62.0 166 33.1
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 4.5e-08 62.0 154 34.4
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.5e-08 62.0 164 31.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 4.5e-08 62.0 167 33.5
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 4.5e-08 62.0 163 34.4
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 5.8e-08 61.6 156 35.3
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 5.8e-08 61.6 137 37.2
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.6e-08 61.2 147 34.0
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 7.6e-08 61.2 174 31.6
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 9.9e-08 60.8 170 32.4
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 9.9e-08 60.8 163 32.5
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 9.9e-08 60.8 161 32.9
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.3e-07 60.5 158 34.2
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.3e-07 60.5 170 33.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.3e-07 60.5 170 33.5
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.3e-07 60.5 170 34.1
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.3e-07 60.5 170 33.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.7e-07 60.1 149 33.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.7e-07 60.1 161 33.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 1.7e-07 60.1 161 32.9
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.7e-07 60.1 160 34.4
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.7e-07 60.1 158 34.2
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.9e-07 59.3 160 33.1
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 3.8e-07 58.9 157 32.5
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.9e-07 58.5 140 34.3
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 6.4e-07 58.2 169 33.1
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 6.4e-07 58.2 187 29.9
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 6.4e-07 58.2 153 34.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 8.4e-07 57.8 147 32.7
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 8.4e-07 57.8 169 32.0
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 8.4e-07 57.8 103 36.9
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 8.4e-07 57.8 166 32.5
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.4e-06 57.0 158 31.0
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.4e-06 57.0 167 32.9
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.9e-06 56.6 162 32.1
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 1.9e-06 56.6 176 30.7
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.4e-06 56.2 153 32.7
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.2e-06 55.8 85 44.7
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 3.2e-06 55.8 176 30.7
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 3.2e-06 55.8 156 33.3
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 5.5e-06 55.1 160 28.8
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.1e-06 54.7 135 32.6
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 7.1e-06 54.7 154 31.2
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 7.1e-06 54.7 165 30.9
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 7.1e-06 54.7 157 32.5
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.3e-06 54.3 141 32.6
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 9.3e-06 54.3 158 28.5
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 9.3e-06 54.3 174 32.2


User provided reference genes

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