Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.2e-54 215.3 106 100.0
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.9e-53 212.2 106 99.1
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-52 209.1 106 96.2
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.7e-49 198.0 108 93.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-48 196.4 108 92.6
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.0e-43 177.9 107 86.9
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-39 166.4 106 79.2
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.6e-38 160.6 109 81.7
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-37 159.5 100 80.0
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.1e-36 154.1 110 80.9
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.0e-35 151.4 105 81.9
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.5e-34 147.1 110 78.2
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.6e-31 139.4 115 73.9
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 7.0e-24 114.0 111 59.5
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.3e-21 104.0 96 59.4
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 9.5e-21 103.6 108 53.7
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.8e-20 102.1 99 58.6
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.5e-18 96.3 110 52.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-18 96.3 111 53.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.0e-18 95.9 109 51.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.4e-18 94.7 99 56.6
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.8e-18 94.4 108 49.1
BcaC01g03387 Brassica carinata HOM05D037847 ORTHO05D032416 3.7e-17 91.7 102 54.9
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-16 90.1 109 50.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-16 90.1 109 50.5
C03p53040 Brassica napus HOM05D037847 ORTHO05D032416 1.4e-16 89.7 79 60.8
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 2.4e-16 89.0 109 49.5
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 4.1e-16 88.2 109 50.5
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 4.1e-16 88.2 109 50.5
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 4.1e-16 88.2 109 50.5
BolC3t17568H Brassica oleracea HOM05D037847 ORTHO05D032416 2.7e-15 85.5 79 59.5
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 4.6e-15 84.7 99 54.5
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.3e-14 83.2 102 53.9
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 3.9e-14 81.6 98 51.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.1e-14 81.3 98 51.0
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 6.6e-14 80.9 120 47.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 6.6e-14 80.9 115 46.1
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 6.6e-14 80.9 101 51.5
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.1e-13 80.1 114 46.5
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.1e-13 80.1 98 54.1
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.5e-13 79.7 110 49.1
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.5e-13 79.7 114 48.2
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.3e-13 78.6 100 51.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.3e-13 78.6 113 46.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.3e-13 78.6 112 46.4
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.3e-13 78.2 113 46.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.3e-13 78.2 113 46.0
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 5.6e-13 77.8 99 46.5
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.6e-13 77.8 98 51.0
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 5.6e-13 77.8 99 46.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 5.6e-13 77.8 98 50.0
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.3e-13 77.4 111 45.9
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 7.3e-13 77.4 94 51.1
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 9.5e-13 77.0 94 52.1
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.5e-13 77.0 105 44.8
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.1e-12 75.9 93 50.5
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.1e-12 75.9 97 50.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.8e-12 75.5 115 44.3
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 4.7e-12 74.7 95 47.4
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.7e-12 74.7 121 44.6
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 4.7e-12 74.7 106 47.2
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 4.7e-12 74.7 114 45.6
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.2e-12 74.3 94 52.1
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.2e-12 74.3 121 44.6
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.1e-12 73.9 91 49.5
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 8.1e-12 73.9 107 44.9
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.1e-12 73.9 91 51.6
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 8.1e-12 73.9 101 47.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.1e-11 73.6 97 47.4
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.1e-11 73.6 93 50.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.1e-11 73.6 97 48.5
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.4e-11 73.2 94 51.1
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-11 73.2 121 44.6
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.4e-11 73.2 110 49.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-11 73.2 94 51.1
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.8e-11 72.8 93 48.4
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-11 72.8 113 45.1
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.1e-11 72.0 94 47.9
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 4.0e-11 71.6 111 43.2
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.0e-11 71.6 129 41.1
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.0e-11 71.6 129 41.1
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-11 71.2 92 50.0
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 5.2e-11 71.2 92 50.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 6.8e-11 70.9 84 51.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 6.8e-11 70.9 94 50.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 6.8e-11 70.9 99 44.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 8.9e-11 70.5 89 50.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 8.9e-11 70.5 112 43.8
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 8.9e-11 70.5 91 45.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-10 70.1 94 48.9
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 96 44.8
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.2e-10 70.1 94 50.0
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.2e-10 70.1 110 49.1
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.2e-10 70.1 102 47.1
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 113 44.2
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.5e-10 69.7 114 42.1
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.0e-10 69.3 88 46.6
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.0e-10 69.3 108 47.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.6e-10 68.9 95 50.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.6e-10 68.9 92 47.8
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.6e-10 68.9 104 43.3
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 3.4e-10 68.6 85 49.4
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 3.4e-10 68.6 110 40.9
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 4.4e-10 68.2 93 48.4
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 4.4e-10 68.2 93 48.4
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.4e-10 68.2 90 48.9
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 4.4e-10 68.2 108 45.4
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.8e-10 67.8 110 41.8
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 5.8e-10 67.8 107 43.9
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 5.8e-10 67.8 93 44.1
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 5.8e-10 67.8 92 43.5
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 5.8e-10 67.8 92 43.5
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.8e-10 67.8 109 41.3
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.6e-10 67.4 113 42.5
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.6e-10 67.4 113 42.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 7.6e-10 67.4 103 43.7
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 7.6e-10 67.4 103 42.7
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.9e-10 67.0 92 43.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.3e-09 66.6 96 44.8
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.3e-09 66.6 118 44.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.2e-09 65.9 96 43.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 2.2e-09 65.9 92 46.7
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.9e-09 65.5 87 47.1
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 3.8e-09 65.1 84 48.8
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 3.8e-09 65.1 84 48.8
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 4.9e-09 64.7 97 46.4
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.9e-09 64.7 99 47.5
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 6.4e-09 64.3 89 43.8
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.4e-09 63.9 112 43.8
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 8.4e-09 63.9 86 48.8
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 8.4e-09 63.9 93 44.1
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.1e-08 63.5 110 40.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.9e-08 62.8 93 45.2
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.9e-08 62.8 89 47.2
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-08 62.8 83 45.8
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.4e-08 62.4 95 44.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 2.4e-08 62.4 97 45.4
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 4.1e-08 61.6 90 43.3
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.1e-08 61.6 93 39.8
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 5.4e-08 61.2 119 41.2
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.4e-08 61.2 93 41.9
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.4e-08 61.2 90 44.4
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.4e-08 61.2 90 44.4
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 7.1e-08 60.8 101 42.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 7.1e-08 60.8 91 45.1
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 7.1e-08 60.8 102 39.2
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 9.2e-08 60.5 95 41.1
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.6e-07 59.7 90 45.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.6e-07 59.7 93 40.9
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.1e-07 59.3 109 41.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.1e-07 59.3 81 46.9
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.7e-07 58.9 92 44.6
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.5e-07 58.5 86 46.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 7.8e-07 57.4 89 44.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.7e-06 56.2 102 39.2
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.7e-06 56.2 91 42.9
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 1.7e-06 56.2 93 41.9
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.3e-06 55.8 90 40.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.3e-06 55.8 95 40.0
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.0e-06 55.5 90 44.4
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 3.9e-06 55.1 104 36.5
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.1e-06 54.7 94 41.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 5.1e-06 54.7 93 39.8


User provided reference genes

Program Settings