Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 0.0e+00 1191.4 616 100.0
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 0.0e+00 1169.1 616 98.7
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 0.0e+00 1115.1 616 94.8
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 1.4e-305 1052.4 651 87.9
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 4.0e-305 1050.8 650 87.5
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 2.1e-192 676.4 741 56.7
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 1.4e-169 600.5 794 49.7
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 1.8e-156 557.0 819 46.3
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 1.2e-110 404.8 309 64.4
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 5.2e-95 352.8 736 38.0
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 2.8e-88 330.5 239 66.9
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 8.7e-74 282.3 304 47.0
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 2.0e-70 271.2 305 45.9
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 3.2e-68 263.8 307 45.3
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 3.9e-66 256.9 427 33.7
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 1.1e-65 255.4 285 44.6
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 1.5e-65 255.0 303 44.6
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 2.4e-63 247.7 328 39.9
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 1.4e-60 238.4 329 39.8
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 7.1e-60 236.1 340 36.8
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 2.3e-58 231.1 341 39.9
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 6.7e-58 229.6 350 35.4
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 5.7e-57 226.5 298 43.0
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.4e-55 221.9 291 39.5
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 5.3e-55 219.9 293 40.6
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 3.4e-54 217.2 293 41.3
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 6.5e-53 213.0 293 39.9
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 4.2e-52 210.3 298 40.6
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 1.2e-51 208.8 491 33.2
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 1.8e-50 204.9 313 36.7
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 5.1e-50 203.4 284 39.8
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 1.5e-49 201.8 330 36.7
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 2.5e-49 201.1 304 37.5
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 2.5e-49 201.1 260 40.4
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.5e-49 201.1 293 39.6
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 3.3e-49 200.7 306 39.5
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 3.1e-47 194.1 201 52.7
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 5.3e-47 193.4 359 34.0
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 1.2e-46 192.2 337 35.0
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 3.4e-46 190.7 346 32.9
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 2.1e-43 181.4 215 40.5
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 3.0e-42 177.6 302 35.1
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 2.0e-41 174.9 361 33.0
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.2e-38 165.6 193 44.0
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 5.7e-33 146.7 199 39.2
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 2.6e-30 137.9 243 36.6
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 3.5e-30 137.5 177 42.4
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 7.2e-28 129.8 288 30.6
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 1.5e-25 122.1 480 26.7
Carub.0003s2362 Capsella rubella HOM05D008307 ORTHO05D010374 3.3e-25 120.9 334 35.9
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 9.7e-25 119.4 139 40.3
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 1.9e-20 105.1 158 40.5
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.2e-14 85.9 154 33.1
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.6e-14 85.5 316 23.1
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 4.5e-14 84.0 147 32.0
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.9e-13 81.3 151 33.1
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 2.3e-10 71.6 315 24.1
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 5.2e-10 70.5 295 24.4
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 4.5e-06 57.4 149 24.8
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 7.8e-06 56.6 146 27.4


User provided reference genes

Program Settings