Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 3.6e-177 624.8 308 100.0
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 7.9e-177 623.6 308 99.7
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 1.5e-175 619.4 308 99.0
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 3.7e-174 614.8 309 98.7
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 3.1e-173 611.7 307 98.0
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 6.5e-171 604.0 307 96.1
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.6e-164 582.8 306 91.8
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 2.7e-161 572.0 306 90.5
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 2.3e-160 568.9 306 90.2
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 2.3e-160 568.9 306 90.2
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 4.0e-160 568.2 306 90.2
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.0e-159 565.8 306 89.2
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 7.5e-159 563.9 306 88.9
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.8e-152 542.7 305 87.2
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.4e-144 516.5 306 80.1
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.9e-144 513.8 304 80.6
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.9e-144 513.8 304 80.6
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 4.6e-132 474.9 308 75.6
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 1.0e-131 473.8 305 75.1
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 3.9e-131 471.9 305 74.4
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 3.3e-130 468.8 305 71.8
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 4.3e-130 468.4 305 73.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.6e-129 466.5 305 73.8
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 1.8e-128 463.0 305 75.1
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 6.8e-128 461.1 305 73.1
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.0e-127 459.5 300 74.3
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.4e-127 458.8 305 73.1
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.4e-127 458.8 305 73.1
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 7.5e-127 457.6 305 71.8
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 1.7e-126 456.4 305 71.8
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 2.2e-126 456.1 305 73.1
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 3.7e-126 455.3 305 72.1
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 4.9e-126 454.9 309 72.5
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.4e-126 454.5 305 73.1
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 6.4e-126 454.5 305 71.1
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 6.4e-126 454.5 305 71.8
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 3.2e-125 452.2 308 70.1
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 3.2e-125 452.2 305 71.8
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 3.2e-125 452.2 305 72.5
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 3.2e-125 452.2 319 70.5
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 5.4e-125 451.4 306 73.2
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 9.2e-125 450.7 305 70.8
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 1.2e-124 450.3 303 72.3
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 1.6e-124 449.9 305 73.1
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 2.7e-124 449.1 305 72.1
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.7e-124 449.1 307 72.0
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 2.7e-124 449.1 305 71.1
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 3.5e-124 448.7 305 70.2
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 7.8e-124 447.6 305 70.2
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 7.8e-124 447.6 306 71.6
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 7.8e-124 447.6 304 69.7
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.0e-123 447.2 305 70.8
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.3e-123 446.8 305 70.2
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 1.7e-123 446.4 305 70.5
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.3e-123 446.0 305 70.2
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 2.3e-123 446.0 306 71.9
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 3.0e-123 445.7 305 71.1
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 6.6e-123 444.5 304 70.4
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 6.6e-123 444.5 305 70.5
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 1.5e-122 443.4 304 68.8
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 3.3e-122 442.2 305 71.1
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 5.6e-122 441.4 305 68.5
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 7.3e-122 441.0 305 70.5
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 9.5e-122 440.7 305 69.5
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 9.5e-122 440.7 305 68.9
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.2e-121 440.3 304 68.4
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.6e-121 439.9 305 69.5
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 1.6e-121 439.9 304 68.4
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 2.1e-121 439.5 305 71.5
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 8.1e-121 437.6 304 68.4
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.1e-120 437.2 305 69.5
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.4e-120 436.8 313 69.6
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.8e-120 436.4 305 69.8
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.4e-120 436.0 305 68.9
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.4e-120 436.0 322 66.5
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 4.0e-120 435.3 304 66.8
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 6.8e-120 434.5 304 67.1
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 2.0e-119 433.0 308 68.2
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.4e-119 432.2 305 67.5
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 2.2e-118 429.5 321 67.0
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 2.9e-118 429.1 305 66.2
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 1.9e-117 426.4 305 69.2
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 1.6e-116 423.3 350 60.6
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 3.5e-116 422.2 308 66.2
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 4.6e-116 421.8 308 67.2
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 6.0e-116 421.4 308 66.2
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.5e-114 416.8 304 66.1
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.9e-114 416.4 328 61.3
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.1e-112 410.6 286 68.9
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 1.4e-112 410.2 272 73.2
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.8e-112 409.8 384 56.2
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 6.9e-112 407.9 308 65.3
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.0e-111 406.4 341 61.3
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 2.2e-110 402.9 299 65.2
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 2.2e-110 402.9 308 62.7
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 5.4e-109 398.3 309 64.1
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.2e-102 376.3 240 74.2
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 8.4e-102 374.4 307 60.3
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 9.3e-101 370.9 285 63.5
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 2.1e-100 369.8 245 71.0
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 6.0e-100 368.2 305 61.3
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 9.0e-96 354.4 276 64.5
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 2.6e-95 352.8 246 69.5
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 2.4e-93 346.3 305 59.0
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.2e-92 344.0 241 65.6
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 2.1e-92 343.2 301 56.8
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 3.5e-84 315.8 206 70.4
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.8e-83 313.5 314 53.5
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 1.1e-82 310.8 211 67.8
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 2.4e-80 303.1 293 52.6
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 2.2e-78 296.6 295 52.2
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 3.3e-66 256.1 292 45.9
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.6e-58 229.9 148 75.7
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 8.2e-57 224.9 295 42.4
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.1e-56 221.5 146 75.3
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 5.0e-54 215.7 181 56.9
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 5.0e-54 215.7 319 42.3
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 2.6e-50 203.4 159 61.0
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 6.3e-41 172.2 184 52.7
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.0e-39 167.2 149 59.1
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 5.2e-35 152.5 149 51.7
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 4.7e-28 129.4 101 60.4
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 1.0e-27 128.3 106 62.3
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.5e-26 124.4 96 67.7
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.2e-19 99.4 67 67.2
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 7.5e-18 95.5 58 72.4
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.4e-16 91.3 67 61.2
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.9e-13 80.9 66 60.6
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.2e-12 78.2 61 62.3


User provided reference genes

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