Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p12700 Brassica napus HOM05D004163 ORTHO05D004882 1.5e-141 506.1 254 100.0
C07p01970 Brassica napus HOM05D004163 ORTHO05D004882 3.2e-91 339.0 254 72.0
BcaC05g29756 Brassica carinata HOM05D004163 ORTHO05D004882 8.0e-66 254.6 183 73.8
BolC5t34677H Brassica oleracea HOM05D001545 ORTHO05D001600 1.8e-65 253.4 183 73.2
BcaC05g29838 Brassica carinata HOM05D004163 ORTHO05D004882 6.8e-65 251.5 183 72.7
C05p60290 Brassica napus HOM05D001545 ORTHO05D001600 2.6e-64 249.6 183 72.1
Sp3g06030 Schrenkiella parvula HOM05D004163 ORTHO05D004882 2.4e-62 243.0 197 65.0
A05p41110 Brassica napus HOM05D004163 ORTHO05D004882 7.0e-62 241.5 183 71.6
BraA05t22837Z Brassica rapa HOM05D001545 ORTHO05D001600 7.0e-62 241.5 183 71.6
Thhalv10021308m.g Eutrema salsugineum HOM05D004163 ORTHO05D004882 2.1e-58 229.9 198 62.1
AL3G18320 Arabidopsis lyrata HOM05D004163 ORTHO05D004882 1.4e-54 217.2 197 59.9
BcaB04g21309 Brassica carinata HOM05D004163 ORTHO05D004882 2.4e-54 216.5 186 63.4
BcaB04g21311 Brassica carinata HOM05D004163 ORTHO05D004882 5.9e-53 211.8 197 59.9
BcaC09g47939 Brassica carinata HOM05D004163 ORTHO05D004882 1.0e-52 211.1 183 60.7
BolC1t05569H Brassica oleracea HOM05D001545 ORTHO05D001600 1.0e-52 211.1 183 60.7
Carub.0003s0660 Capsella rubella HOM05D004163 ORTHO05D004882 1.0e-52 211.1 199 58.3
AT3G07090 Arabidopsis thaliana HOM05D004163 ORTHO05D004882 2.3e-52 209.9 197 57.9
CARHR081680 Cardamine hirsuta HOM05D004163 ORTHO05D004882 1.5e-51 207.2 197 56.9
BraA01t04398Z Brassica rapa HOM05D004163 ORTHO05D004882 1.0e-49 201.1 192 57.3
BNapus_Darmor_BZH_scaffold_109p00240 Brassica napus HOM05D001545 ORTHO05D001600 2.9e-47 193.0 214 51.9
THA.LOC104822505 Tarenaya hassleriana HOM05D004163 ORTHO05D004882 8.3e-47 191.4 180 54.4
Aa31LG5G17650 Aethionema arabicum HOM05D004163 ORTHO05D004882 2.7e-45 186.4 177 55.9
Gohir.A11G137300 Gossypium hirsutum HOM05D004163 ORTHO05D004882 7.8e-45 184.9 220 48.6
Aa31sc164G40 Aethionema arabicum HOM05D004163 ORTHO05D004882 1.5e-43 180.6 179 53.6
Gohir.D11G143700 Gossypium hirsutum HOM05D004163 ORTHO05D004882 1.9e-43 180.3 219 47.5
Cpa.g.sc8.162 Carica papaya HOM05D004163 ORTHO05D004882 1.2e-42 177.6 183 49.2
PGR044G0385 Punica granatum HOM05D004163 ORTHO05D004882 1.6e-42 177.2 175 53.7
Lalb_Chr01g0022371 Lupinus albus HOM05D004163 ORTHO05D004882 3.6e-42 176.0 131 64.9
GSVIVG01028648001 Vitis vinifera HOM05D004163 ORTHO05D004882 3.6e-42 176.0 162 56.8
Gorai.007G153900 Gossypium raimondii HOM05D004163 ORTHO05D004882 4.7e-42 175.6 188 50.0
TPR.G9029 Trifolium pratense HOM05D004163 ORTHO05D004882 4.7e-42 175.6 185 50.8
CiPaw.04G105700 Carya illinoinensis HOM05D004163 ORTHO05D004882 1.1e-41 174.5 168 54.8
Manes.13G045400 Manihot esculenta HOM05D004163 ORTHO05D004882 2.3e-41 173.3 184 48.9
CANSAT01G0846 Cannabis sativa HOM05D004163 ORTHO05D004882 3.1e-41 172.9 185 52.4
Gohir.A08G194200 Gossypium hirsutum HOM05D004163 ORTHO05D004882 4.0e-41 172.6 189 49.7
Gorai.004G225400 Gossypium raimondii HOM05D004163 ORTHO05D004882 4.0e-41 172.6 189 49.7
Nitab4.5_0000045g0110 Nicotiana tabacum HOM05D004163 ORTHO05D004882 4.0e-41 172.6 131 63.4
C07p01630 Brassica napus HOM05D004163 ORTHO05D004882 5.2e-41 172.2 116 83.6
Nitab4.5_0006192g0030 Nicotiana tabacum HOM05D004163 ORTHO05D004882 5.2e-41 172.2 131 63.4
CAN.G154.3 Capsicum annuum HOM05D004163 ORTHO05D004882 6.8e-41 171.8 166 53.0
Glyma.18G170900 Glycine max HOM05D004163 ORTHO05D004882 8.9e-41 171.4 145 57.9
Gohir.D08G212000 Gossypium hirsutum HOM05D004163 ORTHO05D004882 8.9e-41 171.4 189 49.2
Lj2A1132G68 Lonicera japonica HOM05D004163 ORTHO05D004882 8.9e-41 171.4 188 51.1
Lj1g0012524 Lotus japonicus HOM05D004163 ORTHO05D004882 8.9e-41 171.4 184 49.5
Lalb_Chr03g0041791 Lupinus albus HOM05D004163 ORTHO05D004882 8.9e-41 171.4 131 63.4
Medtr7g058510 Medicago truncatula HOM05D004163 ORTHO05D004882 8.9e-41 171.4 189 50.3
QL09p054666 Quercus lobata HOM05D004163 ORTHO05D004882 1.2e-40 171.0 168 55.4
Eucgr.K02173 Eucalyptus grandis HOM05D004163 ORTHO05D004882 1.5e-40 170.6 183 52.5
Eucgr.K02178 Eucalyptus grandis HOM05D004163 ORTHO05D004882 2.0e-40 170.2 183 52.5
RcHm_v2.0_Chr6g0284951 Rosa chinensis HOM05D004163 ORTHO05D004882 2.0e-40 170.2 129 62.8
Actinidia37588 Actinidia chinensis HOM05D004163 ORTHO05D004882 2.6e-40 169.9 132 61.4
Atru.chr5.2002 Acer truncatum HOM05D004163 ORTHO05D004882 3.4e-40 169.5 211 48.3
Psat3g145080 Pisum sativum HOM05D004163 ORTHO05D004882 4.4e-40 169.1 196 46.4
Ciclev10021450m.g Citrus clementina HOM05D004163 ORTHO05D004882 5.8e-40 168.7 176 52.3
FAN15G0391 Fragaria x ananassa HOM05D004163 ORTHO05D004882 5.8e-40 168.7 175 52.0
FAN27G1937 Fragaria x ananassa HOM05D004163 ORTHO05D004882 5.8e-40 168.7 175 52.0
Glyma.08G354700 Glycine max HOM05D004163 ORTHO05D004882 5.8e-40 168.7 145 56.6
Sed0004920 Sechium edule HOM05D004163 ORTHO05D004882 5.8e-40 168.7 180 51.7
COL.COLO4_08179 Corchorus olitorius HOM05D004163 ORTHO05D004882 7.5e-40 168.3 187 49.7
CiPaw.03G150300 Carya illinoinensis HOM05D004163 ORTHO05D004882 9.8e-40 167.9 188 50.0
HanXRQChr15g0468291 Helianthus annuus HOM05D004163 ORTHO05D004882 9.8e-40 167.9 183 51.4
MD10G1165200 Malus domestica HOM05D004163 ORTHO05D004882 9.8e-40 167.9 178 52.8
MD05G1176500 Malus domestica HOM05D004163 ORTHO05D004882 1.3e-39 167.5 203 46.8
Manes.12G047002 Manihot esculenta HOM05D004163 ORTHO05D004882 1.3e-39 167.5 166 55.4
Dinv19207 Davidia involucrata HOM05D004163 ORTHO05D004882 1.7e-39 167.2 204 46.1
DCAR_012637 Daucus carota HOM05D004163 ORTHO05D004882 2.2e-39 166.8 141 56.7
Solyc09g061310.3 Solanum lycopersicum HOM05D004163 ORTHO05D004882 2.2e-39 166.8 212 44.8
vmacro14756 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 3.7e-39 166.0 196 48.0
FvH4_4g33290 Fragaria vesca HOM05D004163 ORTHO05D004882 4.9e-39 165.6 175 51.4
MBI10_g18940_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 4.9e-39 165.6 135 60.7
Peaxi162Scf00107g01625 Petunia axillaris HOM05D004163 ORTHO05D004882 4.9e-39 165.6 182 53.3
Phvul.008G125200 Phaseolus vulgaris HOM05D004163 ORTHO05D004882 4.9e-39 165.6 189 48.1
TWI18G0775 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 6.4e-39 165.2 182 50.5
Actinidia30080 Actinidia chinensis HOM05D004163 ORTHO05D004882 8.3e-39 164.9 196 49.5
ClCG09G009070 Citrullus lanatus HOM05D004163 ORTHO05D004882 8.3e-39 164.9 183 51.4
Prupe.8G203600 Prunus persica HOM05D004163 ORTHO05D004882 1.1e-38 164.5 173 50.9
Sopen09g024070 Solanum pennellii HOM05D004163 ORTHO05D004882 1.1e-38 164.5 204 45.6
Cc01_g17110 Coffea canephora HOM05D004163 ORTHO05D004882 1.9e-38 163.7 169 53.3
PGSC0003DMG400017659 Solanum tuberosum HOM05D004163 ORTHO05D004882 1.9e-38 163.7 203 45.8
SGA_v2.0_scaffold1G00744 Striga asiatica HOM05D004163 ORTHO05D004882 2.4e-38 163.3 187 49.2
Thecc.01G226700 Theobroma cacao HOM05D004163 ORTHO05D004882 2.4e-38 163.3 179 49.2
ECA247G0816 Erigeron canadensis HOM05D004163 ORTHO05D004882 3.2e-38 162.9 175 50.3
Migut.D00532 Erythranthe guttata HOM05D004163 ORTHO05D004882 3.2e-38 162.9 180 50.6
Hund05534 Selenicereus undatus HOM05D004163 ORTHO05D004882 3.2e-38 162.9 175 52.6
Hund05538 Selenicereus undatus HOM05D004163 ORTHO05D004882 3.2e-38 162.9 175 52.6
Rhsim13G0044700 Rhododendron simsii HOM05D004163 ORTHO05D004882 5.4e-38 162.2 189 49.7
MSTRG.17551 Avicennia marina HOM05D004163 ORTHO05D004882 7.1e-38 161.8 183 49.7
Duzib133G0118 Durio zibethinus HOM05D004163 ORTHO05D004882 7.1e-38 161.8 191 47.1
Aqoxy2G03890 Aquilegia oxysepala HOM05D004163 ORTHO05D004882 9.2e-38 161.4 186 50.5
Nn3g19955 Nelumbo nucifera HOM05D004163 ORTHO05D004882 9.2e-38 161.4 187 48.1
VMungo1383G2575 Vigna mungo HOM05D004163 ORTHO05D004882 9.2e-38 161.4 196 45.9
arahy.Tifrunner.gnm1.ann1.PP5Q2Q Arachis hypogaea HOM05D004163 ORTHO05D004882 1.2e-37 161.0 190 49.5
TAR362G1211 Trochodendron aralioides HOM05D004163 ORTHO05D004882 1.6e-37 160.6 188 49.5
DCAR_000532 Daucus carota HOM05D004163 ORTHO05D004882 2.1e-37 160.2 142 54.2
Sabra02G0184100 Salix brachista HOM05D004163 ORTHO05D004882 2.1e-37 160.2 129 58.9
BcaC06g35635 Brassica carinata HOM05D004163 ORTHO05D004882 2.7e-37 159.8 161 61.5
Duzib138G0078 Durio zibethinus HOM05D004163 ORTHO05D004882 4.6e-37 159.1 197 46.7
unitig_22.g6322 Utricularia gibba HOM05D004163 ORTHO05D004882 6.0e-37 158.7 143 55.9
arahy.Tifrunner.gnm1.ann1.IH4GAK Arachis hypogaea HOM05D004163 ORTHO05D004882 7.8e-37 158.3 184 47.8
Ca_07522_v3 Cicer arietinum L. HOM05D004163 ORTHO05D004882 7.8e-37 158.3 187 46.5
HanXRQChr10g0279771 Helianthus annuus HOM05D004163 ORTHO05D004882 7.8e-37 158.3 184 48.4
Potri.002G241700 Populus trichocarpa HOM05D004163 ORTHO05D004882 1.0e-36 157.9 186 48.4
Os02g0814000 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 1.7e-36 157.1 133 57.1
TWI36G1488 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 1.7e-36 157.1 172 50.6
Sed0020546 Sechium edule HOM05D004163 ORTHO05D004882 2.3e-36 156.8 182 48.4
AUR62031805 Chenopodium quinoa HOM05D004163 ORTHO05D004882 3.0e-36 156.4 131 58.0
ATR0736G127 Amborella trichopoda HOM05D004163 ORTHO05D004882 3.9e-36 156.0 129 56.6
CDE02G0060 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 5.1e-36 155.6 182 48.9
MSTRG.21422 Avicennia marina HOM05D004163 ORTHO05D004882 6.6e-36 155.2 188 47.3
PSO675G2819 Papaver somniferum HOM05D004163 ORTHO05D004882 6.6e-36 155.2 129 56.6
HPP92_008969 Vanilla planifolia HOM05D004163 ORTHO05D004882 6.6e-36 155.2 191 46.1
vmacro02754 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 8.6e-36 154.8 190 46.8
Lsat_1_v5_gn_5_180180 Lactuca sativa HOM05D004163 ORTHO05D004882 1.5e-35 154.1 181 47.0
Lsat_1_v5_gn_9_12141 Lactuca sativa HOM05D004163 ORTHO05D004882 1.5e-35 154.1 126 58.7
CsaV3_7G025890 Cucumis sativus L. HOM05D004163 ORTHO05D004882 2.5e-35 153.3 183 47.0
TAR633G1583 Trochodendron aralioides HOM05D004163 ORTHO05D004882 3.3e-35 152.9 187 46.5
Hma1.2p1_0970F.1_g242660 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 4.3e-35 152.5 199 44.7
Nn1g07844 Nelumbo nucifera HOM05D004163 ORTHO05D004882 4.3e-35 152.5 175 49.7
PSO339G2763 Papaver somniferum HOM05D004163 ORTHO05D004882 1.2e-34 151.0 176 47.7
PSO339G4819 Papaver somniferum HOM05D004163 ORTHO05D004882 1.2e-34 151.0 176 47.7
PSO832G2991 Papaver somniferum HOM05D004163 ORTHO05D004882 1.2e-34 151.0 176 47.7
AUR62008905 Chenopodium quinoa HOM05D004163 ORTHO05D004882 1.6e-34 150.6 176 48.9
MD05G1176100 Malus domestica HOM05D004163 ORTHO05D004882 2.8e-34 149.8 154 48.1
Zm00001eb258670 Zea mays HOM05D004163 ORTHO05D004882 2.8e-34 149.8 183 46.4
ClCG07G001940 Citrullus lanatus HOM05D004163 ORTHO05D004882 6.8e-33 145.2 126 54.8
CsaV3_3G029920 Cucumis sativus L. HOM05D004163 ORTHO05D004882 8.9e-33 144.8 153 47.7
CSS0028699 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 1.5e-32 144.1 177 48.6
CSS0045261 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 1.5e-32 144.1 177 48.6
BcaC06g36633 Brassica carinata HOM05D004163 ORTHO05D004882 4.1e-30 136.0 78 92.3
MELO3C026664.2 Cucumis melo HOM05D004163 ORTHO05D004882 4.1e-30 136.0 192 43.8
HanXRQChr04g0110741 Helianthus annuus HOM05D004163 ORTHO05D004882 7.8e-29 131.7 131 48.9
Os10g0472400 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 7.8e-29 131.7 163 44.8
HanXRQChr10g0287331 Helianthus annuus HOM05D004163 ORTHO05D004882 1.7e-28 130.6 127 50.4
ECA236G3105 Erigeron canadensis HOM05D004163 ORTHO05D004882 1.1e-27 127.9 151 47.0
AagrBONN_evm.TU.Sc2ySwM_117.3750 Anthoceros agrestis HOM05D004163 ORTHO05D004882 1.9e-27 127.1 129 48.1
Pp3c14_10250 Physcomitrium patens HOM05D004163 ORTHO05D004882 2.1e-26 123.6 197 39.1
Zm00001eb221910 Zea mays HOM05D004163 ORTHO05D004882 2.1e-26 123.6 190 40.5
SMO146G0295 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 4.7e-26 122.5 187 39.0
Cpa.g.sc997.5 Carica papaya HOM05D004163 ORTHO05D004882 3.4e-24 116.3 145 45.5
Lsat_1_v5_gn_8_90020 Lactuca sativa HOM05D004163 ORTHO05D004882 5.8e-24 115.5 80 63.8
Mapoly0051s0047 Marchantia polymorpha HOM05D004163 ORTHO05D004882 9.9e-24 114.8 191 39.3
CBR_g567 Chara braunii HOM05D004163 ORTHO05D004882 1.7e-23 114.0 183 37.2
SHI28736 Sapria himalayana HOM05D004163 ORTHO05D004882 2.9e-23 113.2 90 54.4
MBI15_g26747_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.1e-22 111.3 129 48.1
MELO3C021008.2 Cucumis melo HOM05D004163 ORTHO05D004882 5.4e-22 109.0 140 45.0
MBI16_g22910_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.2e-21 107.8 147 44.9
EL10Ac7g17826 Beta vulgaris HOM05D004163 ORTHO05D004882 2.7e-21 106.7 161 44.7
MCO11G711 Micromonas commoda HOM05D004163 ORTHO05D004882 6.6e-20 102.1 90 50.0
Pp3c11_1330 Physcomitrium patens HOM05D004163 ORTHO05D004882 1.9e-19 100.5 182 33.5
SMO173G0033 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 2.5e-19 100.1 71 62.0
PRCOL_00000114 Prasinoderma coloniale HOM05D004163 ORTHO05D004882 3.3e-19 99.8 137 38.0
C07p01620 Brassica napus HOM05D004163 ORTHO05D004882 1.3e-18 97.8 54 87.0
Cre12.g555850 Chlamydomonas reinhardtii HOM05D004163 ORTHO05D004882 4.8e-18 95.9 101 45.5
MBI05_g47467_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 2.9e-15 86.7 114 44.7
Sc24g0003580 Simmondsia chinensis HOM05D004163 ORTHO05D004882 1.4e-14 84.3 131 40.5
BolC7t40606H Brassica oleracea HOM05D004163 ORTHO05D004882 1.3e-12 77.8 78 59.0
MBI18_g31614_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 5.6e-11 72.4 118 41.5
Os02g0788133 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 4.8e-10 69.3 43 62.8
CDE01G0537 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 1.5e-08 64.3 30 86.7
FvH4_2g19170 Fragaria vesca HOM05D004163 ORTHO05D004882 3.8e-07 59.7 149 30.9
Gohir.A12G214700 Gossypium hirsutum HOM05D000481 ORTHO05D000471 2.4e-06 57.0 82 32.9
MBI05_g08208_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 3.2e-06 56.6 162 32.1
Gohir.D03G166400 Gossypium hirsutum HOM05D000481 ORTHO05D000471 4.2e-06 56.2 82 31.7
Gorai.003G176000 Gossypium raimondii HOM05D000481 ORTHO05D000471 4.2e-06 56.2 82 31.7
HPP92_002100 Vanilla planifolia HOM05D000481 ORTHO05D000471 4.2e-06 56.2 92 31.5
Gohir.D12G217300 Gossypium hirsutum HOM05D000481 ORTHO05D000471 7.1e-06 55.5 82 32.9
Gohir.A03G006100 Gossypium hirsutum HOM05D000481 ORTHO05D000471 9.3e-06 55.1 82 31.7
Gorai.008G232900 Gossypium raimondii HOM05D000481 ORTHO05D000471 9.3e-06 55.1 82 32.9


User provided reference genes

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