Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 3.5e-293 1011.1 609 100.0
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.9e-270 935.6 667 89.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.8e-260 902.5 590 94.9
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-248 863.2 675 84.1
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 9.3e-246 853.6 671 83.6
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.3e-235 818.5 734 71.3
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 2.4e-233 812.4 721 76.4
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.2e-194 682.9 519 83.0
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 4.3e-190 668.7 727 68.4
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 2.2e-178 629.8 711 64.6
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 3.6e-173 612.5 733 64.0
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 2.6e-171 606.3 718 64.3
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.6e-171 606.3 739 62.5
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.4e-169 600.5 732 63.7
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 3.3e-166 589.3 666 65.0
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 2.4e-164 583.2 707 65.2
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 3.2e-161 572.8 725 62.6
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.3e-154 550.8 745 60.5
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.7e-133 479.6 644 60.9
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.1e-132 478.0 710 55.8
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.9e-129 467.2 740 50.1
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.7e-122 444.1 745 46.7
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 5.9e-115 419.1 490 64.7
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.4e-113 414.5 487 64.5
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 3.8e-98 363.2 514 50.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 5.0e-98 362.8 522 51.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.5e-97 360.5 512 47.7
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.1e-96 355.9 449 50.8
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.8e-95 354.4 604 44.5
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.5e-94 351.3 525 45.9
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.0e-94 350.9 601 44.1
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 3.4e-94 350.1 628 43.9
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 5.7e-94 349.4 625 45.0
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 3.7e-93 346.7 613 44.9
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 6.3e-93 345.9 485 46.6
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.1e-92 345.1 635 42.4
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.4e-92 344.7 507 49.1
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.1e-92 343.6 507 46.2
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 4.1e-92 343.2 437 54.5
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 5.4e-92 342.8 507 48.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 9.1e-92 342.0 613 43.4
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.6e-91 341.3 479 46.3
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.6e-91 341.3 489 55.0
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.6e-91 341.3 635 45.8
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 2.7e-91 340.5 770 40.3
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 5.9e-91 339.3 579 42.3
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.7e-90 337.8 479 54.5
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 5.0e-90 336.3 602 41.0
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 8.6e-90 335.5 596 43.0
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.9e-89 334.3 644 46.0
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 3.2e-89 333.6 556 43.2
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 9.5e-89 332.0 629 42.3
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.1e-88 330.9 618 40.9
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.6e-88 330.1 529 49.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 3.6e-88 330.1 606 42.7
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 6.1e-88 329.3 478 46.9
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.0e-87 328.6 719 44.9
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.6e-86 323.9 481 46.6
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 4.4e-86 323.2 480 46.0
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.5e-86 322.4 615 40.8
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.8e-86 322.0 761 37.5
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.8e-85 320.5 572 43.0
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.8e-85 320.5 480 51.7
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 3.7e-85 320.1 746 41.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.1e-84 318.5 606 41.4
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 2.4e-84 317.4 583 42.4
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 7.0e-84 315.8 596 45.6
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 5.9e-83 312.8 478 43.9
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.7e-82 311.2 509 48.7
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.0e-82 309.7 549 43.0
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 8.6e-82 308.9 615 45.9
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.9e-81 307.8 472 51.9
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.5e-81 307.4 577 41.8
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.3e-81 307.0 398 48.5
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.3e-81 306.6 616 40.1
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 4.3e-81 306.6 472 44.7
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 5.6e-81 306.2 519 50.1
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 5.6e-81 306.2 604 41.2
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.5e-81 305.4 757 40.8
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.2e-80 305.1 606 39.4
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-79 302.0 616 39.8
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.0e-79 300.4 616 39.8
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 4.0e-79 300.1 614 39.9
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 6.8e-79 299.3 406 55.2
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 2.6e-78 297.4 592 39.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.7e-78 296.2 579 46.1
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 7.5e-78 295.8 625 39.0
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 9.8e-78 295.4 602 46.0
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.3e-77 295.0 633 43.3
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.3e-77 295.0 590 40.2
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.4e-77 292.7 479 50.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.4e-77 292.7 519 47.4
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.8e-76 291.2 473 50.3
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.2e-76 290.4 579 38.9
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.2e-76 290.4 591 39.4
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.0e-75 287.7 552 39.9
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 2.7e-75 287.3 636 42.0
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 5.9e-75 286.2 553 47.0
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.0e-74 285.4 533 44.7
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.3e-74 284.3 617 39.1
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 5.0e-74 283.1 650 42.9
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 6.6e-74 282.7 459 43.4
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 8.6e-74 282.3 645 40.6
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.3e-73 280.0 749 37.2
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 7.3e-73 279.3 583 46.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.8e-72 277.3 776 34.7
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 3.6e-72 276.9 475 48.8
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.1e-71 275.4 734 40.2
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.3e-71 274.2 608 38.3
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 3.1e-71 273.9 472 50.6
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 4.0e-71 273.5 626 42.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 5.2e-71 273.1 632 37.5
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-70 271.6 746 37.4
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 4.4e-70 270.0 616 44.5
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.7e-69 268.1 768 34.1
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 2.2e-69 267.7 582 45.9
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 4.9e-69 266.5 611 43.2
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.4e-68 265.0 556 45.0
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.2e-67 261.9 746 38.6
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.6e-67 261.5 615 42.1
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 2.0e-67 261.2 621 38.5
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.2e-64 251.9 300 51.0
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 4.7e-64 250.0 544 44.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 5.2e-63 246.5 622 42.3
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.7e-61 241.5 474 47.0
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.4e-60 238.4 628 40.8
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 8.1e-56 222.6 616 39.9
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 3.4e-54 217.2 483 43.1
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 2.9e-53 214.2 505 40.6
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.4e-52 211.8 814 29.2
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 5.6e-49 199.9 365 43.6
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.7e-45 188.3 163 61.3
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.9e-44 184.9 544 36.9
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.9e-44 184.9 324 50.9
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 4.2e-44 183.7 227 52.4
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.4e-36 157.9 423 32.9
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.2e-36 157.5 243 48.1
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.1e-35 154.8 114 71.1
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.5e-33 147.9 424 30.2
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.8e-31 141.7 553 31.1
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.2e-30 139.0 423 31.4
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.6e-30 137.9 389 41.1
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 9.9e-30 136.0 138 56.5
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 6.4e-29 133.3 100 71.0
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.9e-28 131.7 420 29.3
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.8e-24 117.9 539 26.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 6.9e-23 113.2 87 70.1
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.5e-20 104.8 423 26.5
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.6e-19 102.1 631 29.5
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 6.0e-19 100.1 235 38.3
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-17 94.7 74 68.9
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.8e-16 91.3 71 69.0
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.3e-16 90.1 66 71.2
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 2.6e-14 84.7 56 73.2
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.4e-14 84.3 78 57.7
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.5e-14 84.0 90 54.4
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-13 80.9 62 69.4
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 6.5e-13 80.1 96 52.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.5e-13 79.7 62 69.4
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-12 78.6 54 75.9
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.5e-12 77.0 54 74.1
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.2e-12 76.6 55 74.5
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.6e-11 74.3 103 43.7
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 3.6e-11 74.3 63 65.1
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-10 72.4 45 82.2
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-10 72.0 45 82.2
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-09 68.9 45 77.8
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.9e-09 68.6 51 68.6
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.3e-09 67.8 45 75.6
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.7e-09 66.2 50 68.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.8e-08 64.7 50 66.0
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.4e-07 62.4 79 46.8
AL5G30090 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 4.1e-07 60.8 41 82.9
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.9e-07 60.1 54 64.8
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-06 57.8 39 74.4


User provided reference genes

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