Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 4.3e-22 107.8 91 100.0
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 4.3e-22 107.8 91 100.0
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 4.3e-22 107.8 91 100.0
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 4.3e-22 107.8 91 100.0
Sp3g22000 Schrenkiella parvula HOM05D005842 ORTHO05D007077 2.3e-15 85.5 89 88.8
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 2.3e-15 85.5 89 55.1
AL3G39590 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 4.3e-14 81.3 89 85.4
Carub.0003s2457 Capsella rubella HOM05D005842 ORTHO05D007077 2.2e-13 79.0 89 84.3
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-12 76.6 88 65.9
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-12 76.6 88 65.9
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-12 76.6 88 65.9
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 4.1e-12 74.7 73 79.5
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 4.1e-12 74.7 73 79.5
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 1.2e-11 73.2 107 59.8
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-11 72.8 107 61.7
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-11 72.8 107 61.7
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-11 72.8 107 61.7
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-11 72.8 107 61.7
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 1.5e-11 72.8 107 60.7
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 2.0e-11 72.4 89 43.8
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 2.0e-11 72.4 89 43.8
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 2.0e-11 72.4 89 43.8
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 3.4e-11 71.6 88 45.5
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 4.5e-11 71.2 108 65.7
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 4.5e-11 71.2 108 65.7
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 5.9e-11 70.9 107 57.9
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 5.9e-11 70.9 107 58.9
A03p43520 Brassica napus HOM05D005842 ORTHO05D007077 1.3e-10 69.7 77 88.3
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.3e-10 69.7 88 44.3
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 1.7e-10 69.3 108 70.4
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 1.7e-10 69.3 108 70.4
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 1.7e-10 69.3 108 70.4
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.7e-10 69.3 89 44.9
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.7e-10 69.3 88 44.3
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.7e-10 69.3 89 43.8
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 2.2e-10 68.9 71 64.8
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 2.2e-10 68.9 107 59.8
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.2e-10 68.9 89 44.9
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.8e-10 68.2 89 46.1
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 3.8e-10 68.2 88 63.6
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 6.5e-10 67.4 89 46.1
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 1.1e-09 66.6 107 57.9
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 1.1e-09 66.6 107 57.9
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.1e-09 66.6 92 42.4
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.4e-09 66.2 91 40.7
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.9e-09 65.9 87 41.4
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 3.2e-09 65.1 89 44.9
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 5.5e-09 64.3 92 41.3
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 9.4e-09 63.5 82 63.4
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 9.4e-09 63.5 82 63.4
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 9.4e-09 63.5 82 64.6
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 9.4e-09 63.5 82 40.2
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 1.2e-08 63.2 107 59.8
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.2e-08 63.2 83 41.0
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 1.2e-08 63.2 89 67.4
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.2e-08 63.2 91 41.8
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.6e-08 62.8 92 40.2
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.7e-08 62.0 89 43.8
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 2.7e-08 62.0 84 44.0
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 3.6e-08 61.6 82 42.7
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 3.6e-08 61.6 96 39.6
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 7.9e-08 60.5 118 52.5
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 7.9e-08 60.5 82 65.9
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 7.9e-08 60.5 82 65.9
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 7.9e-08 60.5 82 64.6
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.4e-07 59.7 89 61.8
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.4e-07 59.7 89 61.8
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.8e-07 59.3 82 65.9
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 1.8e-07 59.3 81 74.1
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 1.8e-07 59.3 91 59.3
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 2.3e-07 58.9 91 41.8
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 2.3e-07 58.9 83 63.9
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.3e-07 58.9 87 37.9
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 3.9e-07 58.2 93 43.0
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 3.9e-07 58.2 87 40.2
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 6.7e-07 57.4 91 59.3
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.7e-07 57.4 91 59.3
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 8.8e-07 57.0 89 60.7
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 1.1e-06 56.6 89 69.7
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 1.5e-06 56.2 28 92.9
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 2.0e-06 55.8 30 86.7
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 2.0e-06 55.8 88 69.3
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 2.6e-06 55.5 28 92.9
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 2.6e-06 55.5 98 40.8
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 3.3e-06 55.1 87 41.4
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 3.3e-06 55.1 87 41.4
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 4.4e-06 54.7 85 37.6
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 5.7e-06 54.3 92 43.5
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 7.4e-06 53.9 71 42.3
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 9.7e-06 53.5 87 37.9


User provided reference genes

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