Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 0.0e+00 1273.1 728 100.0
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 0.0e+00 1263.1 728 99.5
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 0.0e+00 1254.2 734 98.5
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 0.0e+00 1193.7 730 91.8
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 0.0e+00 1191.4 730 91.6
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 7.5e-311 1070.1 742 84.8
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 7.5e-250 867.5 745 75.6
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 8.0e-236 820.8 755 68.9
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 7.0e-232 807.7 746 71.7
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 1.2e-223 780.4 755 67.8
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 2.1e-220 769.6 743 67.3
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 9.8e-218 760.8 751 68.3
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 1.4e-158 564.3 321 92.5
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 3.4e-133 479.9 752 48.1
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 3.3e-120 436.8 766 43.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 2.7e-50 204.5 907 28.6
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 5.1e-49 200.3 875 28.2
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 3.3e-48 197.6 880 29.5
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.9e-43 181.8 861 27.9
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 7.9e-42 176.4 877 25.9
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 5.1e-41 173.7 859 28.1
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 8.8e-41 172.9 906 29.6
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 9.7e-40 169.5 870 26.3
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 1.7e-39 168.7 874 29.2
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.3e-39 166.8 854 29.6
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 8.2e-39 166.4 899 26.0
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.8e-38 165.2 867 26.3
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 4.1e-38 164.1 931 26.0
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 4.1e-38 164.1 894 25.8
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.2e-37 162.5 825 27.0
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.0e-37 161.8 900 25.8
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.6e-37 161.4 851 26.2
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 5.9e-37 160.2 884 24.2
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.3e-36 159.1 908 25.8
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.3e-36 159.1 861 25.8
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.2e-36 158.3 855 26.9
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 2.2e-36 158.3 905 26.2
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 5.0e-36 157.1 956 25.5
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.2e-35 154.5 912 25.1
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 9.4e-35 152.9 795 26.9
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 4.7e-34 150.6 869 25.5
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 8.0e-34 149.8 836 25.7
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.0e-33 149.4 787 25.7
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.0e-33 147.9 794 26.4
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 5.2e-33 147.1 898 24.8
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 8.8e-33 146.4 898 25.1
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 7.4e-32 143.3 855 27.3
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.7e-31 142.1 897 25.9
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.8e-31 141.4 893 25.8
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.8e-31 141.4 833 25.9
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 6.3e-31 140.2 845 25.6
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.1e-30 139.4 546 30.0
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.8e-30 138.7 881 24.4
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 2.4e-30 138.3 906 25.2
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 5.3e-30 137.1 863 25.0
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 9.1e-30 136.3 896 26.0
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.2e-29 136.0 938 24.2
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 4.5e-29 134.0 868 26.2
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 7.7e-29 133.3 942 25.7
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 5.0e-28 130.6 872 26.6
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 8.5e-28 129.8 880 23.0
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.5e-27 129.0 815 25.4
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 1.9e-27 128.6 756 25.4
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.9e-27 128.6 836 24.2
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 3.2e-27 127.9 864 25.1
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 5.5e-27 127.1 830 25.2
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 7.2e-27 126.7 827 24.5
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.2e-26 125.9 753 25.8
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.6e-26 125.6 904 26.7
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 2.7e-26 124.8 866 26.6
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 3.6e-26 124.4 861 25.6
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 4.7e-26 124.0 806 24.7
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 6.1e-26 123.6 782 25.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 8.0e-26 123.2 269 37.5
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 4.0e-25 120.9 285 33.0
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 6.7e-25 120.2 862 26.0
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 8.8e-25 119.8 829 24.7
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 2.0e-24 118.6 813 25.5
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 1.3e-23 115.9 781 24.3
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.7e-23 115.5 410 31.7
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 2.2e-23 115.2 853 23.1
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.8e-23 114.8 858 23.9
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.1e-22 112.8 1024 23.7
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.4e-22 112.5 828 24.0
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 4.1e-22 110.9 807 24.2
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 7.0e-22 110.2 410 31.2
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.2e-21 109.4 454 28.9
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 1.6e-21 109.0 833 24.7
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 2.0e-21 108.6 788 23.6
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 2.0e-21 108.6 936 23.4
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 2.7e-21 108.2 148 43.9
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.7e-21 108.2 838 24.7
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.9e-21 107.1 1033 23.1
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 2.9e-20 104.8 942 23.5
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 5.0e-20 104.0 771 24.5
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.7e-18 98.2 468 25.6
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 8.0e-18 96.7 887 23.0
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.0e-17 96.3 179 35.8
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.4e-17 95.9 173 35.3
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.3e-17 95.1 826 22.8
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 2.3e-17 95.1 877 25.8
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.0e-17 94.7 201 35.3
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 8.8e-17 93.2 489 25.2
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.5e-16 92.4 782 22.5
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 2.6e-16 91.7 543 26.3
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.4e-16 91.3 172 41.9
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 4.4e-16 90.9 784 23.1
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 5.7e-16 90.5 679 26.1
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 9.8e-16 89.7 900 23.1
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 9.8e-16 89.7 838 23.7
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 1.7e-15 89.0 542 26.2
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 2.2e-15 88.6 167 34.1
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.4e-14 85.1 837 21.3
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 7.0e-14 83.6 148 33.8
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 5.9e-13 80.5 224 29.0
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 6.6e-12 77.0 824 22.0
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.1e-11 76.3 668 23.8
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.9e-11 75.5 908 22.5
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.2e-10 72.8 166 36.1
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-10 72.8 452 25.0
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.8e-10 71.6 829 23.6
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 3.6e-10 71.2 753 22.2
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 8.0e-10 70.1 516 22.5
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.4e-09 69.3 200 31.0
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 1.5e-08 65.9 173 28.3
AL2G22900 Arabidopsis lyrata HOM05D005593 ORTHO05D002225 3.4e-08 64.7 32 90.6
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.3e-07 62.8 241 29.0
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 1.7e-07 62.4 173 28.3
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 2.8e-07 61.6 677 22.5
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.7e-07 61.2 698 22.8
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 8.3e-07 60.1 175 25.7
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.4e-06 59.3 175 27.4
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.4e-06 59.3 175 27.4
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.8e-06 58.9 906 21.3
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 2.4e-06 58.5 177 28.8
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 3.1e-06 58.2 231 25.1
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 4.1e-06 57.8 177 28.2
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.4e-06 57.4 206 27.2
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 5.4e-06 57.4 231 26.0


User provided reference genes

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