Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p11090 Brassica napus HOM05D000108 ORTHO05D018756 5.2e-63 244.2 123 100.0
BolC7t41580H Brassica oleracea HOM05D000108 ORTHO05D018756 6.8e-63 243.8 122 100.0
BolC2t09823H Brassica oleracea HOM05D000108 ORTHO05D018756 1.6e-59 232.6 124 96.8
C02p38080 Brassica napus HOM05D000108 ORTHO05D018756 6.6e-58 227.3 124 95.2
A01p26440 Brassica napus HOM05D000108 ORTHO05D001149 2.8e-24 115.5 86 72.1
BolC1t03310H Brassica oleracea HOM05D000108 ORTHO05D001149 2.8e-24 115.5 86 72.1
BraA01t02568Z Brassica rapa HOM05D000108 ORTHO05D001149 2.8e-24 115.5 86 72.1
BcaB05g23477 Brassica carinata HOM05D000108 ORTHO05D001149 1.1e-23 113.6 86 70.9
Thhalv10002384m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 1.1e-23 113.6 86 69.8
BcaC09g49719 Brassica carinata HOM05D000108 ORTHO05D001149 4.1e-23 111.7 86 70.9
C01p33640 Brassica napus HOM05D000108 ORTHO05D001149 4.1e-23 111.7 86 70.9
Carub.0005s1169 Capsella rubella HOM05D000108 ORTHO05D001149 6.9e-23 110.9 86 68.6
AT3G45850 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 1.5e-22 109.8 86 66.3
CARHR154150 Cardamine hirsuta HOM05D000108 ORTHO05D001149 2.0e-22 109.4 86 67.4
AL5G24530 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 4.5e-22 108.2 86 65.1
Sp5g15680 Schrenkiella parvula HOM05D000108 ORTHO05D001149 2.9e-21 105.5 86 65.1
Aa31LG4G15070 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.6e-19 98.6 86 61.6
THA.LOC104799469 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 1.4e-18 96.7 86 58.1
Cpa.g.sc139.8 Carica papaya HOM05D000108 ORTHO05D001149 1.2e-14 83.6 86 50.0
BcaC03g16087 Brassica carinata HOM05D000108 ORTHO05D018756 1.5e-14 83.2 74 63.5
Ciclev10027728m.g Citrus clementina HOM05D000108 ORTHO05D001149 1.3e-13 80.1 86 48.8
Manes.04G028300 Manihot esculenta HOM05D000108 ORTHO05D001149 1.7e-13 79.7 86 48.8
COL.COLO4_18411 Corchorus olitorius HOM05D000108 ORTHO05D001149 2.2e-13 79.3 86 48.8
Dinv02790 Davidia involucrata HOM05D000108 ORTHO05D001149 2.2e-13 79.3 84 48.8
Thecc.09G332700 Theobroma cacao HOM05D000108 ORTHO05D001149 2.2e-13 79.3 86 48.8
GSVIVG01025071001 Vitis vinifera HOM05D000108 ORTHO05D001149 2.2e-13 79.3 84 50.0
Atru.chr3.3778 Acer truncatum HOM05D000108 ORTHO05D001149 3.8e-13 78.6 86 47.7
Duzib150G0072 Durio zibethinus HOM05D000108 ORTHO05D001149 1.4e-12 76.6 86 48.8
Duzib170G0496 Durio zibethinus HOM05D000108 ORTHO05D001149 1.4e-12 76.6 86 47.7
Gohir.A05G099500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 1.4e-12 76.6 86 48.8
Gohir.D05G099400 Gossypium hirsutum HOM05D000108 ORTHO05D001149 1.4e-12 76.6 86 48.8
Gorai.009G103300 Gossypium raimondii HOM05D000108 ORTHO05D001149 1.4e-12 76.6 86 48.8
Actinidia07086 Actinidia chinensis HOM05D000108 ORTHO05D001149 2.5e-12 75.9 84 45.2
Cc01_g12000 Coffea canephora HOM05D000108 ORTHO05D001149 2.5e-12 75.9 84 46.4
Gorai.003G138600 Gossypium raimondii HOM05D000108 ORTHO05D001149 2.5e-12 75.9 86 47.7
Actinidia37269 Actinidia chinensis HOM05D000108 ORTHO05D001149 3.2e-12 75.5 84 45.2
CSS0041728 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 3.2e-12 75.5 82 47.6
Duzib168G1926 Durio zibethinus HOM05D000108 ORTHO05D001149 4.2e-12 75.1 86 46.5
Gohir.D03G131700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 5.5e-12 74.7 86 47.7
PSO339G0953 Papaver somniferum HOM05D000108 ORTHO05D001149 9.4e-12 73.9 86 46.5
PSO384G2763 Papaver somniferum HOM05D000108 ORTHO05D001149 9.4e-12 73.9 86 46.5
Phvul.L002157 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 1.2e-11 73.6 86 44.2
Potri.009G026000 Populus trichocarpa HOM05D000108 ORTHO05D001149 1.2e-11 73.6 86 43.0
Rhsim13G0089400 Rhododendron simsii HOM05D000108 ORTHO05D001149 1.2e-11 73.6 84 45.2
vmacro03137 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 1.2e-11 73.6 84 45.2
Glyma.13G330600 Glycine max HOM05D000108 ORTHO05D001149 1.6e-11 73.2 86 44.2
Manes.11G137400 Manihot esculenta HOM05D000108 ORTHO05D001149 1.6e-11 73.2 86 45.3
MBI14_g42160_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 2.7e-11 72.4 84 45.2
MD11G1118200 Malus domestica HOM05D000108 ORTHO05D001149 2.7e-11 72.4 86 43.0
QL01p035162 Quercus lobata HOM05D000108 ORTHO05D001149 2.7e-11 72.4 86 44.2
VMungo1080G1229 Vigna mungo HOM05D000108 ORTHO05D001149 2.7e-11 72.4 86 43.0
Glyma.11G147108 Glycine max HOM05D000108 ORTHO05D001149 3.6e-11 72.0 86 43.0
CANSAT54G1698 Cannabis sativa HOM05D000108 ORTHO05D001149 6.1e-11 71.2 86 43.0
CiPaw.13G102700 Carya illinoinensis HOM05D000108 ORTHO05D001149 6.1e-11 71.2 86 43.0
FvH4_3g34440 Fragaria vesca HOM05D000108 ORTHO05D001149 7.9e-11 70.9 84 46.4
FAN11G1183 Fragaria x ananassa HOM05D000108 ORTHO05D001149 7.9e-11 70.9 84 46.4
Gohir.A03G036500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 7.9e-11 70.9 86 46.5
Sed0013938 Sechium edule HOM05D000108 ORTHO05D001149 7.9e-11 70.9 86 44.2
Prupe.6G088500 Prunus persica HOM05D000108 ORTHO05D001149 1.0e-10 70.5 86 45.3
ECA236G0719 Erigeron canadensis HOM05D000108 ORTHO05D001149 1.4e-10 70.1 89 44.9
FAN16G0704 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.8e-10 69.7 84 45.2
FAN21G0560 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.8e-10 69.7 84 45.2
FAN25G2360 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.8e-10 69.7 84 45.2
Sabra16G0140000 Salix brachista HOM05D000108 ORTHO05D001149 1.8e-10 69.7 86 44.2
TAR636G0183 Trochodendron aralioides HOM05D000108 ORTHO05D001149 1.8e-10 69.7 86 44.2
ClCG03G001810 Citrullus lanatus HOM05D000108 ORTHO05D001149 2.3e-10 69.3 86 43.0
MELO3C020688.2 Cucumis melo HOM05D000108 ORTHO05D001149 2.3e-10 69.3 86 43.0
CsaV3_1G033760 Cucumis sativus L. HOM05D000108 ORTHO05D001149 2.3e-10 69.3 86 43.0
Glyma.15G043400 Glycine max HOM05D000108 ORTHO05D001149 3.0e-10 68.9 86 43.0
Haze_23988 Corylus avellana HOM05D000108 ORTHO05D001149 3.9e-10 68.6 84 44.0
Haze_23992 Corylus avellana HOM05D000108 ORTHO05D001149 3.9e-10 68.6 84 44.0
Nitab4.5_0003784g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001149 3.9e-10 68.6 84 44.0
Sc12g0001870 Simmondsia chinensis HOM05D000108 ORTHO05D001149 3.9e-10 68.6 83 44.6
Cfa011412 Carpinus fangiana HOM05D000108 ORTHO05D001149 5.1e-10 68.2 84 44.0
Nn2g10569 Nelumbo nucifera HOM05D000108 ORTHO05D001149 5.1e-10 68.2 84 40.5
AUR62001858 Chenopodium quinoa HOM05D000108 ORTHO05D001149 6.7e-10 67.8 86 40.7
HanXRQChr04g0110361 Helianthus annuus HOM05D000108 ORTHO05D001149 6.7e-10 67.8 84 41.7
Sed0002914 Sechium edule HOM05D000108 ORTHO05D001149 6.7e-10 67.8 86 41.9
PGSC0003DMG400015544 Solanum tuberosum HOM05D000108 ORTHO05D001149 6.7e-10 67.8 84 44.0
Dinv35678 Davidia involucrata HOM05D000108 ORTHO05D001149 8.8e-10 67.4 86 45.3
Peaxi162Scf00072g00021 Petunia axillaris HOM05D000108 ORTHO05D001149 8.8e-10 67.4 84 44.0
Phvul.011G070000 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 8.8e-10 67.4 86 40.7
RcHm_v2.0_Chr5g0062081 Rosa chinensis HOM05D000108 ORTHO05D001149 8.8e-10 67.4 84 45.2
TPR.G11605 Trifolium pratense HOM05D000108 ORTHO05D001149 8.8e-10 67.4 86 39.5
CAN.G84.2 Capsicum annuum HOM05D000108 ORTHO05D001149 1.1e-09 67.0 84 44.0
Nitab4.5_0002380g0100 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.1e-09 67.0 84 42.9
Potri.001G233700 Populus trichocarpa HOM05D000108 ORTHO05D001149 1.1e-09 67.0 86 43.0
Solyc11g072820.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.1e-09 67.0 84 44.0
Sopen11g030490 Solanum pennellii HOM05D000108 ORTHO05D001149 1.1e-09 67.0 84 44.0
TWI79G1415 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 1.5e-09 66.6 84 41.7
Lj3g0021793 Lotus japonicus HOM05D000108 ORTHO05D001149 2.0e-09 66.2 86 39.5
PGR119G0104 Punica granatum HOM05D000108 ORTHO05D001149 2.0e-09 66.2 84 41.7
CAN.G394.9 Capsicum annuum HOM05D000108 ORTHO05D001149 2.6e-09 65.9 84 45.2
HanXRQChr05g0133911 Helianthus annuus HOM05D000108 ORTHO05D001149 2.6e-09 65.9 89 41.6
Lj1A178T40 Lonicera japonica HOM05D000108 ORTHO05D001149 2.6e-09 65.9 58 53.4
Sc21g0005340 Simmondsia chinensis HOM05D000108 ORTHO05D001149 2.6e-09 65.9 84 42.9
EL10Ac7g15934 Beta vulgaris HOM05D000108 ORTHO05D001149 3.3e-09 65.5 86 38.4
ECA248G0078 Erigeron canadensis HOM05D000108 ORTHO05D001149 3.3e-09 65.5 84 41.7
ECA248G3318 Erigeron canadensis HOM05D000108 ORTHO05D001149 3.3e-09 65.5 84 41.7
Migut.N02645 Erythranthe guttata HOM05D000108 ORTHO05D001149 3.3e-09 65.5 86 41.9
Glyma.12G074300 Glycine max HOM05D000108 ORTHO05D001149 3.3e-09 65.5 86 40.7
Lsat_1_v5_gn_5_166981 Lactuca sativa HOM05D000108 ORTHO05D001149 3.3e-09 65.5 84 40.5
VMungo1127G1903 Vigna mungo HOM05D000108 ORTHO05D001149 3.3e-09 65.5 91 39.6
arahy.Tifrunner.gnm1.ann1.QN0DU3 Arachis hypogaea HOM05D000108 ORTHO05D001149 4.4e-09 65.1 86 41.9
MD03G1105800 Malus domestica HOM05D000108 ORTHO05D001149 4.4e-09 65.1 86 44.2
Nitab4.5_0000182g0040 Nicotiana tabacum HOM05D000108 ORTHO05D001149 4.4e-09 65.1 84 41.7
Psat5g281840 Pisum sativum HOM05D000108 ORTHO05D001149 4.4e-09 65.1 86 38.4
SalBow3G2091 Salvia bowleyana HOM05D000108 ORTHO05D001149 4.4e-09 65.1 86 43.0
TAR633G1860 Trochodendron aralioides HOM05D000108 ORTHO05D001149 4.4e-09 65.1 86 43.0
AUR62009653 Chenopodium quinoa HOM05D000108 ORTHO05D001149 5.7e-09 64.7 86 38.4
Lalb_Chr14g0374921 Lupinus albus HOM05D000108 ORTHO05D001149 5.7e-09 64.7 86 39.5
Lalb_Chr19g0137571 Lupinus albus HOM05D000108 ORTHO05D001149 5.7e-09 64.7 86 43.0
Medtr2g096010 Medicago truncatula HOM05D000108 ORTHO05D001149 5.7e-09 64.7 86 38.4
TWI31G0805 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 5.7e-09 64.7 72 44.4
FAN25G0698 Fragaria x ananassa HOM05D000108 ORTHO05D011597 7.4e-09 64.3 84 42.9
arahy.Tifrunner.gnm1.ann1.2070QL Arachis hypogaea HOM05D000108 ORTHO05D001149 9.7e-09 63.9 86 38.4
Lsat_1_v5_gn_8_76521 Lactuca sativa HOM05D000108 ORTHO05D001149 9.7e-09 63.9 89 42.7
Nn2g12816 Nelumbo nucifera HOM05D000108 ORTHO05D001149 9.7e-09 63.9 86 38.4
THA.LOC104826348 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 9.7e-09 63.9 81 39.5
Ah.08g215030 Amaranthus hybridus HOM05D000108 ORTHO05D001149 1.3e-08 63.5 86 39.5
Oeu058513.1 Olea europaea HOM05D000108 ORTHO05D001149 1.3e-08 63.5 86 41.9
Os05g0117798 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001149 1.3e-08 63.5 86 43.0
Solyc06g075580.4 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.7e-08 63.2 84 44.0
Hma1.2p1_0700F.1_g205780 Hydrangea macrophylla HOM05D000108 ORTHO05D018756 2.2e-08 62.8 59 54.2
Hma1.2p1_2948F.1_g330680 Hydrangea macrophylla HOM05D000108 ORTHO05D018756 2.2e-08 62.8 56 55.4
Sopen06g031970 Solanum pennellii HOM05D000108 ORTHO05D001149 2.2e-08 62.8 84 42.9
Medtr0440s0020 Medicago truncatula HOM05D000163 ORTHO05D018756 2.8e-08 62.4 75 40.0
arahy.Tifrunner.gnm1.ann1.CITF9E Arachis hypogaea HOM05D000108 ORTHO05D001149 3.7e-08 62.0 87 40.2
SGA_v2.0_scaffold104G30113 Striga asiatica HOM05D000108 ORTHO05D001149 4.8e-08 61.6 91 44.0
Aqoxy4G03111 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 6.3e-08 61.2 87 41.4
Lalb_Chr22g0350061 Lupinus albus HOM05D000108 ORTHO05D001149 6.3e-08 61.2 86 37.2
Peaxi162Scf00836g00218 Petunia axillaris HOM05D000108 ORTHO05D001149 6.3e-08 61.2 84 40.5
Thhalv10016147m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 1.4e-07 60.1 81 43.2
Carub.0004s0959 Capsella rubella HOM05D000108 ORTHO05D001149 2.4e-07 59.3 85 42.4
Zm00001eb265660 Zea mays HOM05D000108 ORTHO05D001149 3.1e-07 58.9 83 42.2
CDE09G0015 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 4.1e-07 58.5 86 40.7
AT2G28620 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 5.3e-07 58.2 84 38.1
BolC6t37314H Brassica oleracea HOM05D000313 ORTHO05D011597 2.0e-06 56.2 119 36.1
vmacro20089 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 2.0e-06 56.2 117 33.3
Aa31LG5G7600 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.4e-06 55.5 81 39.5
CDE02G1599 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 3.4e-06 55.5 86 44.2
RhsimUnG0121300 Rhododendron simsii HOM05D000108 ORTHO05D001149 3.4e-06 55.5 85 36.5
BcaB06g28234 Brassica carinata HOM05D000108 ORTHO05D001149 5.9e-06 54.7 80 43.8
A03p40640 Brassica napus HOM05D000108 ORTHO05D011597 5.9e-06 54.7 86 44.2
A06p15180 Brassica napus HOM05D000108 ORTHO05D011597 5.9e-06 54.7 86 44.2
Oeu041005.1 Olea europaea HOM05D000108 ORTHO05D001149 7.7e-06 54.3 84 36.9
THA.LOC104815761 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 7.7e-06 54.3 59 44.1


User provided reference genes

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