Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.6e-199 698.7 404 100.0
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 6.3e-198 694.1 404 99.5
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 6.3e-198 694.1 404 99.5
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 3.8e-187 658.3 405 93.6
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 5.2e-184 647.9 406 92.9
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 7.5e-143 511.1 411 78.3
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 2.2e-126 456.4 359 79.9
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 3.3e-114 416.0 417 68.3
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 4.2e-109 399.1 417 65.5
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 3.3e-106 389.4 422 65.6
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 3.0e-83 313.2 320 67.8
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 4.4e-82 309.3 415 52.8
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.7e-62 244.2 451 49.2
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.0e-51 206.5 421 39.7
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.4e-48 198.0 421 38.5
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.6e-47 194.5 445 37.3
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 6.6e-46 189.1 415 41.0
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 3.3e-45 186.8 446 39.9
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 6.8e-43 179.1 415 38.6
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 3.4e-42 176.8 409 41.1
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 9.2e-40 168.7 435 38.2
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.2e-40 168.7 386 37.0
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.3e-38 164.9 445 38.4
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 6.6e-38 162.5 427 36.3
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.5e-37 160.6 385 36.1
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 2.1e-36 157.5 419 35.1
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 3.6e-36 156.8 496 33.5
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 6.2e-36 156.0 465 34.0
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.8e-35 154.5 458 37.1
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 5.2e-35 152.9 441 37.4
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 5.2e-35 152.9 475 34.7
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.2e-34 151.8 477 34.8
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.5e-34 151.4 490 34.3
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 5.8e-34 149.4 438 34.7
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.7e-33 147.9 448 35.3
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.4e-33 146.0 447 34.5
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.3e-33 145.6 423 38.3
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 8.3e-33 145.6 428 33.4
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.4e-32 144.8 437 38.2
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 2.4e-32 144.1 465 34.6
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.2e-32 143.7 454 35.7
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 9.2e-32 142.1 392 35.5
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.6e-31 139.8 436 33.5
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 7.8e-31 139.0 410 35.6
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.0e-30 138.7 422 32.5
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.3e-30 138.3 460 34.3
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.3e-30 138.3 460 34.3
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.3e-30 137.5 440 35.0
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 5.1e-30 136.3 429 37.3
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 8.6e-30 135.6 429 34.7
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 8.6e-30 135.6 444 37.6
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.5e-29 134.8 432 37.7
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 4.3e-29 133.3 464 34.1
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 4.3e-29 133.3 391 32.2
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 2.1e-28 131.0 398 33.7
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.1e-28 131.0 389 35.2
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 2.1e-28 131.0 163 52.1
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 6.2e-28 129.4 411 33.6
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 8.1e-28 129.0 428 36.2
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 4.0e-27 126.7 130 56.9
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.0e-27 126.7 415 32.5
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 4.0e-27 126.7 442 36.4
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 5.2e-27 126.3 450 35.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 8.9e-27 125.6 459 33.3
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.5e-26 124.8 421 36.6
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.6e-26 124.0 148 52.0
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.6e-26 124.0 430 37.4
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.6e-26 124.0 430 37.4
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.4e-26 123.2 432 33.6
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 7.5e-26 122.5 439 32.1
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 9.9e-26 122.1 501 32.1
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.3e-25 121.7 459 31.4
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.7e-25 121.3 407 36.9
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.2e-25 120.9 424 34.2
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 2.9e-25 120.6 295 36.9
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 2.9e-25 120.6 148 47.3
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.9e-25 120.6 387 34.4
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.9e-25 120.6 392 31.4
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.1e-24 118.6 388 34.0
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.1e-24 118.6 387 34.6
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 3.2e-24 117.1 483 30.0
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 3.2e-24 117.1 387 34.4
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.1e-24 116.7 143 55.9
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 5.4e-24 116.3 296 36.8
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 7.1e-24 115.9 290 36.9
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 7.1e-24 115.9 428 32.9
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.2e-23 115.2 145 56.6
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 1.3e-22 111.7 408 32.8
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 5.1e-22 109.8 242 37.6
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 6.6e-22 109.4 391 31.2
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 6.6e-22 109.4 128 59.4
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 8.6e-22 109.0 379 31.4
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 8.6e-22 109.0 180 45.6
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.1e-21 108.6 169 41.4
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.9e-21 107.8 414 31.4
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 3.3e-21 107.1 453 30.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.3e-21 107.1 128 46.1
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 4.3e-21 106.7 373 33.0
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.2e-20 105.1 301 40.5
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.6e-20 104.8 423 32.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.1e-19 102.1 400 29.5
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.0e-19 100.1 424 32.5
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 8.9e-19 99.0 606 28.1
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.2e-18 98.6 602 27.9
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.5e-18 98.2 596 29.0
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.4e-18 97.1 174 40.2
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 5.8e-18 96.3 609 28.2
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 9.9e-18 95.5 447 31.5
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.3e-17 95.1 167 39.5
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 1.3e-17 95.1 428 33.9
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.7e-17 94.7 609 28.2
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 2.4e-16 90.9 511 30.9
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.2e-16 90.5 425 32.2
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 5.4e-16 89.7 294 37.4
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.3e-14 85.1 148 42.6
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.3e-14 85.1 396 30.8
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.3e-14 84.3 179 36.3
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 8.7e-14 82.4 147 42.9
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.9e-13 81.3 170 37.1
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 4.7e-12 76.6 414 28.3
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.6e-10 70.9 381 28.3
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.6e-10 70.9 535 24.3
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 5.8e-10 69.7 156 34.6
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 7.6e-10 69.3 46 69.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 9.9e-10 68.9 400 28.0
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.7e-09 68.2 119 42.9
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.9e-08 64.7 199 32.7
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 7.1e-08 62.8 150 41.3
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 2.1e-07 61.2 135 53.3
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 6.0e-07 59.7 387 25.8
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 6.0e-07 59.7 246 36.2
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 1.0e-06 58.9 370 30.5


User provided reference genes

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