Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 2108.6 1089 100.0
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 2080.8 1094 98.7
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 0.0e+00 2080.8 1094 98.7
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1977.2 1095 95.0
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 0.0e+00 1935.6 1091 94.2
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1815.0 1102 87.2
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 0.0e+00 1652.9 1112 80.1
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 0.0e+00 1448.3 1112 72.7
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 0.0e+00 1367.4 1243 63.1
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 0.0e+00 1331.6 1242 61.6
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 0.0e+00 1251.1 1379 55.5
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 0.0e+00 1172.9 1158 59.7
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 2.2e-258 896.3 1300 46.6
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 1.0e-133 482.3 1388 31.8
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 2.8e-131 474.2 1279 32.6
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 6.1e-131 473.0 1387 31.4
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 9.5e-124 449.1 1452 30.1
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.7e-120 437.2 1349 31.0
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.1e-119 435.6 1410 29.6
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.4e-119 435.3 1404 30.6
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 6.2e-115 419.9 1369 30.0
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 8.1e-115 419.5 1322 31.2
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 1.8e-114 418.3 1365 30.3
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 6.8e-114 416.4 1416 30.4
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 1.3e-112 412.1 1415 30.5
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 1.7e-112 411.8 1244 30.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 6.0e-110 403.3 1365 31.2
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 1.0e-109 402.5 1332 29.5
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 4.3e-108 397.1 1423 29.0
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 7.3e-108 396.4 1176 30.8
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.6e-107 395.2 1351 29.5
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 4.4e-105 387.1 1401 28.7
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 9.9e-105 386.0 1135 32.9
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 3.7e-104 384.0 1144 32.3
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 4.1e-103 380.6 1361 29.2
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 8.6e-101 372.9 1403 27.4
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 8.6e-101 372.9 1423 28.4
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.2e-99 369.0 1327 29.5
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 4.7e-99 367.1 1352 28.6
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 4.7e-99 367.1 1318 29.4
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 3.4e-97 360.9 1266 29.5
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 5.8e-97 360.1 1394 27.3
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 4.9e-96 357.1 1345 29.4
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 6.4e-96 356.7 1353 28.2
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 8.4e-96 356.3 1355 28.3
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 8.4e-96 356.3 1348 27.7
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 8.4e-96 356.3 1476 27.6
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-95 355.9 1327 28.7
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 5.4e-95 353.6 1330 28.9
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 2.5e-92 344.7 1309 28.7
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 4.8e-91 340.5 1189 29.5
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 9.9e-89 332.8 1310 27.7
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.7e-88 332.0 1199 29.1
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.7e-88 332.0 1199 29.1
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 2.2e-88 331.6 1023 29.9
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 7.1e-87 326.6 1120 29.5
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.7e-85 322.0 1183 28.6
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 1.7e-85 322.0 1153 28.4
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 6.6e-85 320.1 1257 28.6
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 4.3e-84 317.4 1232 28.2
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 1.5e-81 308.9 1155 28.6
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 4.9e-80 303.9 1335 27.0
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-79 302.4 1238 27.8
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 9.3e-79 299.7 1338 26.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.6e-78 298.9 1155 29.6
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 3.5e-78 297.7 1292 27.2
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 4.6e-78 297.4 1364 26.1
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 3.9e-77 294.3 1336 27.5
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 2.5e-76 291.6 1359 26.3
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 3.3e-76 291.2 1305 26.4
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.6e-73 281.6 1267 28.3
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 2.9e-72 278.1 1050 29.3
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 5.5e-71 273.9 1323 26.2
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 2.1e-70 271.9 421 37.8
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.7e-70 271.6 1343 26.4
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.3e-68 264.2 474 36.3
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 5.7e-68 263.8 474 36.3
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 2.1e-67 261.9 1333 26.0
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 6.9e-66 256.9 407 38.3
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 7.6e-65 253.4 1128 26.8
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.3e-64 252.7 1259 25.3
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 5.1e-61 240.7 1409 25.3
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 8.7e-61 240.0 345 40.9
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.5e-60 239.2 1243 25.3
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.5e-60 239.2 1102 26.5
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 6.9e-58 230.3 1105 26.5
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 6.9e-58 230.3 423 34.3
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 9.0e-58 229.9 1285 25.4
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 1.9e-55 222.2 423 36.2
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-54 219.5 503 31.2
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.8e-53 215.7 1135 26.6
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.1e-52 213.0 487 30.4
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 5.7e-52 210.7 415 32.8
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 9.7e-52 209.9 413 32.9
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.2e-49 203.0 1166 24.7
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.0e-48 199.9 400 33.0
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 1.3e-48 199.5 309 37.9
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 8.5e-48 196.8 283 46.6
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.2e-47 194.9 1364 22.9
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.4e-47 193.4 326 37.4
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 1.8e-45 189.1 1364 22.2
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.1e-45 187.6 1268 23.7
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 7.4e-44 183.7 271 37.3
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 1.7e-43 182.6 1122 25.2
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 3.7e-43 181.4 306 37.9
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 3.5e-41 174.9 1237 24.9
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.3e-40 172.9 403 30.3
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 4.7e-38 164.5 278 37.4
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 6.1e-38 164.1 1311 24.0
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.1e-36 159.8 281 40.9
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.1e-34 151.8 296 40.2
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.7e-32 146.0 348 30.5
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 8.8e-29 133.7 265 39.2
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 2.2e-27 129.0 151 46.4
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.1e-26 125.2 265 38.5
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 4.1e-26 124.8 253 38.3
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 8.5e-24 117.1 134 55.2
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 8.5e-24 117.1 134 55.2
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 1.0e-21 110.2 89 68.5
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 1.0e-21 110.2 89 68.5
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 5.4e-18 97.8 238 35.7
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.2e-18 97.1 128 49.2
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 9.2e-18 97.1 126 38.1
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.0e-17 95.9 129 49.6
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 3.5e-17 95.1 143 38.5
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 1.5e-15 89.7 144 36.1
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 6.1e-14 84.3 127 33.1
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 9.8e-12 77.0 90 43.3
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.7e-11 76.3 121 31.4
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 4.1e-10 71.6 217 33.6
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 5.9e-09 67.8 95 43.2
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 1.1e-07 63.5 87 36.8
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.1e-07 63.5 103 32.0
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 3.3e-07 62.0 116 37.1
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 2.1e-06 59.3 71 46.5
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 2.1e-06 59.3 73 47.9
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 3.6e-06 58.5 58 50.0
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 6.2e-06 57.8 107 35.5


User provided reference genes

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