Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 8.4e-260 899.8 449 100.0
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 2.4e-259 898.3 449 99.8
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 2.4e-259 898.3 449 99.8
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 7.1e-259 896.7 449 99.6
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.7e-258 894.8 449 99.3
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 2.8e-255 884.8 449 98.4
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.6e-247 859.0 449 95.5
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 9.9e-245 849.7 452 94.0
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 3.9e-241 837.8 454 93.8
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.9e-240 835.5 453 93.6
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.8e-238 828.9 452 92.3
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 6.9e-238 827.0 454 92.5
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.4e-230 802.0 452 88.1
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.0e-225 785.0 453 87.0
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 3.8e-220 768.1 452 87.8
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.0e-209 733.4 442 81.7
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 4.4e-208 728.0 443 80.6
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 5.7e-208 727.6 442 81.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 2.8e-207 725.3 442 81.2
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 4.8e-207 724.5 451 79.6
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 4.1e-206 721.5 451 78.9
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.2e-205 719.9 451 79.4
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 5.9e-205 717.6 443 79.9
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 5.9e-205 717.6 443 80.1
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.0e-204 716.8 452 78.1
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 2.9e-204 715.3 443 79.7
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.9e-204 715.3 443 79.7
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.9e-204 715.3 443 79.7
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.0e-204 714.5 450 77.8
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 8.5e-204 713.8 442 79.2
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 8.5e-204 713.8 443 80.4
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.1e-203 713.4 450 78.2
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.1e-203 713.4 450 77.8
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.5e-203 713.0 442 79.4
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.9e-203 712.6 450 77.8
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 5.5e-203 711.1 442 78.5
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 7.2e-203 710.7 440 80.0
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.6e-202 709.5 443 79.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.1e-202 709.1 439 78.4
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 4.7e-202 708.0 446 79.4
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.0e-200 702.6 439 77.9
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 3.3e-200 701.8 442 78.5
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 2.8e-199 698.7 448 77.0
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.8e-199 698.7 443 77.7
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.8e-199 698.0 441 78.0
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 4.8e-199 698.0 442 79.9
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 7.0e-198 694.1 449 76.4
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 9.1e-198 693.7 450 77.6
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.7e-197 692.2 442 76.9
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 3.5e-197 691.8 447 76.7
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.7e-196 689.5 439 77.0
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 5.0e-196 688.0 455 75.2
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 8.5e-196 687.2 422 79.4
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.5e-196 687.2 423 79.2
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.9e-195 686.0 441 77.8
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.2e-195 685.3 448 75.9
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.2e-195 685.3 423 79.0
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 4.2e-195 684.9 444 76.8
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 9.4e-195 683.7 441 75.3
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.1e-194 682.6 423 79.0
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 4.7e-194 681.4 444 77.0
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 8.0e-194 680.6 442 77.4
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.4e-193 679.9 452 75.9
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.4e-193 679.9 440 75.9
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.0e-193 678.3 450 75.1
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 8.8e-193 677.2 454 73.8
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 2.6e-192 675.6 440 75.0
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 4.4e-192 674.9 449 75.9
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 5.7e-192 674.5 443 76.3
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 9.8e-192 673.7 440 74.8
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 9.8e-192 673.7 440 74.8
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.3e-191 673.3 456 74.1
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 3.7e-191 671.8 442 75.1
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 4.8e-191 671.4 442 76.2
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 6.3e-191 671.0 442 74.7
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.3e-191 671.0 458 73.8
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 7.0e-190 667.5 458 74.0
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.7e-189 664.1 458 72.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 7.7e-189 664.1 453 73.3
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-188 663.7 444 73.6
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.7e-188 662.9 444 73.4
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 8.6e-188 660.6 449 73.9
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.1e-187 660.2 459 73.0
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.9e-187 659.4 458 73.4
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 2.5e-187 659.1 457 74.0
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 3.3e-187 658.7 450 72.0
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 4.2e-187 658.3 441 74.8
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.5e-187 657.9 444 73.0
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.2e-186 656.8 450 71.3
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 2.1e-186 656.0 457 73.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.8e-185 652.9 422 76.8
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 3.0e-185 652.1 459 72.5
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 6.8e-185 651.0 475 70.3
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 4.4e-184 648.3 438 73.3
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 7.5e-184 647.5 457 71.1
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 8.3e-183 644.0 443 72.7
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 5.4e-182 641.3 449 71.5
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 7.0e-182 641.0 448 71.9
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 9.2e-182 640.6 430 72.1
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.6e-181 639.8 443 74.0
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.0e-181 639.4 450 71.3
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 4.5e-181 638.3 458 71.4
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.3e-180 636.0 563 62.2
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 8.6e-180 634.0 447 69.6
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.4e-176 622.1 440 70.7
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 8.3e-175 617.5 442 70.6
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 2.7e-173 612.5 443 67.9
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 6.0e-173 611.3 483 65.4
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 7.8e-173 610.9 443 67.9
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.0e-172 609.0 443 67.9
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 8.6e-172 607.4 381 77.4
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.1e-169 600.5 447 68.5
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 3.4e-168 595.5 441 66.9
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 5.8e-168 594.7 465 65.6
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.9e-167 592.4 421 70.1
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 8.3e-167 590.9 446 67.7
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.1e-163 580.5 429 68.3
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.4e-161 573.5 446 64.3
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.4e-158 563.5 444 63.5
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 7.1e-158 561.2 359 77.2
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.6e-154 550.1 443 65.7
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 7.8e-149 531.2 336 77.1
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.8e-149 531.2 395 69.4
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 6.6e-148 528.1 430 61.6
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.7e-141 506.1 342 71.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 7.8e-141 504.6 429 59.9
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.0e-136 490.0 433 59.6
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 4.5e-136 488.8 427 57.8
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.7e-135 486.9 335 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 9.3e-134 481.1 440 56.8
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.3e-132 477.2 435 55.9
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 9.0e-129 464.5 322 72.0
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 3.7e-122 442.6 394 59.9
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.3e-105 385.6 295 64.1
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.5e-104 384.0 336 60.4
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 8.2e-90 335.1 209 78.5
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.3e-87 327.8 258 65.1
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 5.0e-87 325.9 255 63.1
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 2.5e-86 323.6 208 78.8
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.8e-81 307.4 428 44.2
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 2.8e-74 283.5 197 71.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 3.2e-65 253.4 178 72.5
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 9.8e-51 205.3 160 68.1
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 3.9e-47 193.4 136 72.8
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.5e-43 181.4 152 61.2
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 2.4e-41 174.1 151 62.3
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 3.9e-39 166.8 222 46.8
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.9e-22 111.3 61 91.8
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.9e-12 76.3 56 64.3
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 9.6e-06 55.8 88 38.6


User provided reference genes

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